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This orthogroup contains 199 genes from 138 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 199 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR10501 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B | 167 / 199 | 83.9% | 96.0% of 174 | ≥80% support |
| Pfam | PF00076 | RRM_1 — RNA recognition motif | 174 / 199 | 87.4% | 100.0% of 174 | ≥80% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 174 / 199 | 87.4% | 100.0% of 174 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 174 / 199 | 87.4% | 100.0% of 174 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 174 / 199 | 87.4% | 100.0% of 174 | ≥80% support |
| GO | GO:0005685 Cellular Component | U1 snRNP | 167 / 199 | 83.9% | 96.0% of 174 | ≥80% support |
| GO | GO:0030619 Molecular Function | U1 snRNA binding | 167 / 199 | 83.9% | 96.0% of 174 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Lophelia pertusa | OS493_013499-T1 | KAJ7392127.1 | hypothetical protein OS493_013499 [Desmophyllum pertusum] | P43332 U1 small nuclear ribonucleoprotein A OS=Drosophila melanogas | JBrowse |
