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This orthogroup contains 259 genes from 141 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 259 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12135 | DNA REPAIR PROTEIN XP-C / RAD4 | 208 / 259 | 80.3% | 99.5% of 209 | ≥80% support |
| GO | GO:0005737 Cellular Component | cytoplasm | 209 / 259 | 80.7% | 100.0% of 209 | ≥80% support |
| GO | GO:0000111 Cellular Component | nucleotide-excision repair factor 2 complex | 208 / 259 | 80.3% | 99.5% of 209 | ≥80% support |
| GO | GO:0003684 Molecular Function | damaged DNA binding | 208 / 259 | 80.3% | 99.5% of 209 | ≥80% support |
| GO | GO:0003697 Molecular Function | single-stranded DNA binding | 208 / 259 | 80.3% | 99.5% of 209 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 208 / 259 | 80.3% | 99.5% of 209 | ≥80% support |
| GO | GO:0006289 Biological Process | nucleotide-excision repair | 208 / 259 | 80.3% | 99.5% of 209 | ≥80% support |
| GO | GO:0006298 Biological Process | mismatch repair | 208 / 259 | 80.3% | 99.5% of 209 | ≥80% support |
| GO | GO:0071942 Cellular Component | XPC complex | 208 / 259 | 80.3% | 99.5% of 209 | ≥80% support |
| Pfam | PF10405 | BHD_3 — Rad4 beta-hairpin domain 3 | 175 / 259 | 67.6% | 92.1% of 190 | ≥50% support |
| Pfam | PF03835 | Rad4 | 174 / 259 | 67.2% | 91.6% of 190 | ≥50% support |
| Pfam | PF10403 | BHD_1 — Rad4 beta-hairpin domain 1 | 161 / 259 | 62.2% | 84.7% of 190 | ≥50% support |
| Pfam | PF10404 | BHD_2 — Rad4 beta-hairpin domain 2 | 148 / 259 | 57.1% | 77.9% of 190 | ≥50% support |
| GO | GO:0003677 Molecular Function | DNA binding | 181 / 259 | 69.9% | 86.6% of 209 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Millepora alcicornis | ENSCIQP00000008753.1 | none | – | JBrowse | |
| Millepora alcicornis | ENSCIQP00000009524.1 | XP_047122693.1 | DNA repair protein complementing XP-C cells homolog [Hydra vulgaris] | Q01831 DNA repair protein complementing XP-C cells OS=Homo sapiens | JBrowse |
