← Back to the gene family browser
Support counts the member genes carrying the term. % of genes is that count over all 2,234 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF01410 | COLFI — Fibrillar collagen C-terminal domain | 1918 / 2,234 | 85.9% | 94.4% of 2,032 | ≥80% support |
| GO | GO:0005201 Molecular Function | extracellular matrix structural constituent | 1932 / 2,234 | 86.5% | 96.1% of 2,010 | ≥80% support |
| PANTHER | PTHR24023 | COLLAGEN ALPHA | 1668 / 2,234 | 74.7% | 94.7% of 1,762 | ≥50% support |
| Pfam | PF01391 | Collagen | 1660 / 2,234 | 74.3% | 81.7% of 2,032 | ≥50% support |
| GO | GO:0005615 Cellular Component | extracellular space | 1669 / 2,234 | 74.7% | 83.0% of 2,010 | ≥50% support |
| GO | GO:0031012 Cellular Component | extracellular matrix | 1668 / 2,234 | 74.7% | 83.0% of 2,010 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Montipora capitata | g31434.t1 | B8V7R6.1 | RecName: Full=Collagen alpha chain [Acropora millepora] | B8V7R6 Collagen alpha chain (Fragment) OS=Acropora millepora OX=452 | JBrowse |
| Montipora capitata | g31488.t1 | XP_015756958.1 | PREDICTED: collagen alpha-1(II) chain-like [Acropora digitifera] | Q3U962 Collagen alpha-2(V) chain OS=Mus musculus OX=10090 GN=Col5a2 | JBrowse |
| Montipora capitata | g31498.t1 | XP_015756967.1 | PREDICTED: collagen alpha chain-like [Acropora digitifera] | B8V7R6 Collagen alpha chain (Fragment) OS=Acropora millepora OX=452 | JBrowse |
| Montipora capitata | g34673.t1 | XP_044179036.1 | collagen alpha chain-like [Acropora millepora] | B8V7R6 Collagen alpha chain (Fragment) OS=Acropora millepora OX=452 | JBrowse |
| Montipora capitata | g34676.t1 | XP_015756951.1 | PREDICTED: collagen alpha-1(III) chain-like [Acropora digitifera] | Q91717 Collagen alpha-1(II) chain OS=Xenopus laevis OX=8355 GN=col2 | JBrowse |
| Montipora capitata | g34678.t1 | XP_015756952.1 | PREDICTED: collagen alpha-1(I) chain-like [Acropora digitifera] | P08121 Collagen alpha-1(III) chain OS=Mus musculus OX=10090 GN=Col3 | JBrowse |
| Montipora capitata | g34679.t1 | XP_020632456.1 | collagen alpha-1(II) chain-like [Orbicella faveolata] | O42350 Collagen alpha-2(I) chain OS=Aquarana catesbeiana OX=8400 GN | JBrowse |
| Montipora capitata | g4203.t1 | CAH3144094.1 | unnamed protein product, partial [Porites evermanni] | Q8IZC6 Collagen alpha-1(XXVII) chain OS=Homo sapiens OX=9606 GN=COL | JBrowse |
| Montipora capitata | g4774.t1 | XP_044179394.1 | collagen alpha-1(I) chain-like [Acropora millepora] | Q91717 Collagen alpha-1(II) chain OS=Xenopus laevis OX=8355 GN=col2 | JBrowse |
| Montipora capitata | g6614.t1 | XP_015777077.1 | PREDICTED: collagen alpha-1(IX) chain-like isoform X1 [Acropora digitifera] | P13942 Collagen alpha-2(XI) chain OS=Homo sapiens OX=9606 GN=COL11A | JBrowse |
