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This orthogroup contains 517 genes from 144 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 517 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| GO | GO:0003723 Molecular Function | RNA binding | 461 / 517 | 89.2% | 100.0% of 461 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 425 / 517 | 82.2% | 92.2% of 461 | ≥80% support |
| PANTHER | PTHR24012 | RNA BINDING PROTEIN | 348 / 517 | 67.3% | 76.5% of 455 | ≥50% support |
| Pfam | PF00076 | RRM_1 — RNA recognition motif | 364 / 517 | 70.4% | 79.3% of 459 | ≥50% support |
| Pfam | PF00658 | PABP — Poly-adenylate binding protein, unique domain | 325 / 517 | 62.9% | 70.8% of 459 | ≥50% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 365 / 517 | 70.6% | 79.2% of 461 | ≥50% support |
| GO | GO:1990904 Cellular Component | ribonucleoprotein complex | 348 / 517 | 67.3% | 75.5% of 461 | ≥50% support |
| GO | GO:0003730 Molecular Function | mRNA 3'-UTR binding | 333 / 517 | 64.4% | 72.2% of 461 | ≥50% support |
| GO | GO:0005829 Cellular Component | cytosol | 333 / 517 | 64.4% | 72.2% of 461 | ≥50% support |
| GO | GO:0008143 Molecular Function | poly(A) binding | 333 / 517 | 64.4% | 72.2% of 461 | ≥50% support |
| GO | GO:0008266 Molecular Function | poly(U) RNA binding | 333 / 517 | 64.4% | 72.2% of 461 | ≥50% support |
| KEGG | K13126 | PABPC — Spliceosome | 269 / 517 | 52.0% | 98.9% of 272 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Montipora capitata | g12762.t1 | XP_015751591.1 | PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like [Acropora digitifera] | F1QB54 Polyadenylate-binding protein 1A OS=Danio rerio OX=7955 GN=p | JBrowse |
| Montipora capitata | g13369.t1 | XP_015751591.1 | PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like [Acropora digitifera] | Q13310 Polyadenylate-binding protein 4 OS=Homo sapiens OX=9606 GN=P | JBrowse |
| Montipora capitata | g19755.t1 | XP_044181735.1 | LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like [Acropora millepora] | P61286 Polyadenylate-binding protein 1 OS=Bos taurus OX=9913 GN=PAB | JBrowse |
| Montipora capitata | g19759.t1 | KAJ7389282.1 | Polyadenylate-binding protein 4 [Desmophyllum pertusum] | P29341 Polyadenylate-binding protein 1 OS=Mus musculus OX=10090 GN= | JBrowse |
| Montipora capitata | g28124.t1 | CAH3038939.1 | unnamed protein product [Pocillopora meandrina] | P29341 Polyadenylate-binding protein 1 OS=Mus musculus OX=10090 GN= | JBrowse |
| Montipora capitata | g28125.t1 | XP_015751591.1 | PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like [Acropora digitifera] | Q13310 Polyadenylate-binding protein 4 OS=Homo sapiens OX=9606 GN=P | JBrowse |
| Montipora capitata | g28126.t1 | XP_015751591.1 | PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like [Acropora digitifera] | P20965 Polyadenylate-binding protein 1-A OS=Xenopus laevis OX=8355 | JBrowse |
| Montipora capitata | g31074.t1 | XP_015751591.1 | PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like [Acropora digitifera] | F1QB54 Polyadenylate-binding protein 1A OS=Danio rerio OX=7955 GN=p | JBrowse |
| Montipora capitata | g33073.t1 | XP_015751591.1 | PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like [Acropora digitifera] | P29341 Polyadenylate-binding protein 1 OS=Mus musculus OX=10090 GN= | JBrowse |
| Montipora capitata | g6575.t1 | XP_015771639.1 | PREDICTED: polyadenylate-binding protein 1-like isoform X2 [Acropora digitifera] | Q98SP8 Embryonic polyadenylate-binding protein A OS=Xenopus laevis | JBrowse |
