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This orthogroup contains 420 genes from 142 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 420 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR10682 | POLY A POLYMERASE | 336 / 420 | 80.0% | 99.7% of 337 | ≥80% support |
| GO | GO:0004652 Molecular Function | obsolete polynucleotide adenylyltransferase activity | 336 / 420 | 80.0% | 99.4% of 338 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 336 / 420 | 80.0% | 99.4% of 338 | ≥80% support |
| GO | GO:0006378 Biological Process | obsolete mRNA polyadenylation | 336 / 420 | 80.0% | 99.4% of 338 | ≥80% support |
| Pfam | PF20750 | PAP_NTPase — Poly(A) polymerase nucleotidyltransferase domain | 304 / 420 | 72.4% | 89.7% of 339 | ≥50% support |
| Pfam | PF04928 | PAP_central — Poly(A) polymerase central domain | 301 / 420 | 71.7% | 88.8% of 339 | ≥50% support |
| Pfam | PF04926 | PAP_RNA-bind — Poly(A) polymerase predicted RNA binding domain | 282 / 420 | 67.1% | 83.2% of 339 | ≥50% support |
| GO | GO:1990817 Molecular Function | poly(A) RNA polymerase activity | 301 / 420 | 71.7% | 89.1% of 338 | ≥50% support |
| GO | GO:0003723 Molecular Function | RNA binding | 286 / 420 | 68.1% | 84.6% of 338 | ≥50% support |
| GO | GO:0016779 Molecular Function | nucleotidyltransferase activity | 286 / 420 | 68.1% | 84.6% of 338 | ≥50% support |
| GO | GO:0031123 Biological Process | RNA 3'-end processing | 286 / 420 | 68.1% | 84.6% of 338 | ≥50% support |
| KEGG | K14376 | PAP — Messenger RNA biogenesis | 261 / 420 | 62.1% | 98.9% of 264 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Montipora capitata | g23615.t1 | XP_020605131.1 | poly(A) polymerase type 3-like [Orbicella faveolata] | P51006 Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis OX=83 | JBrowse |
| Montipora capitata | g29556.t1 | XP_015749086.1 | PREDICTED: poly(A) polymerase beta-like [Acropora digitifera] | – | JBrowse |
