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This orthogroup contains 347 genes from 141 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 347 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR47958 | ATP-DEPENDENT RNA HELICASE DBP3 | 298 / 347 | 85.9% | 99.0% of 301 | ≥80% support |
| Pfam | PF00270 | DEAD | 280 / 347 | 80.7% | 93.0% of 301 | ≥80% support |
| GO | GO:0003724 Molecular Function | RNA helicase activity | 305 / 347 | 87.9% | 99.7% of 306 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 298 / 347 | 85.9% | 97.4% of 306 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 298 / 347 | 85.9% | 97.4% of 306 | ≥80% support |
| GO | GO:0010494 Cellular Component | cytoplasmic stress granule | 298 / 347 | 85.9% | 97.4% of 306 | ≥80% support |
| GO | GO:0016973 Biological Process | poly(A)+ mRNA export from nucleus | 298 / 347 | 85.9% | 97.4% of 306 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 281 / 347 | 81.0% | 91.8% of 306 | ≥80% support |
| GO | GO:0005524 Molecular Function | ATP binding | 280 / 347 | 80.7% | 91.5% of 306 | ≥80% support |
| Pfam | PF00271 | Helicase_C — Helicase conserved C-terminal domain | 266 / 347 | 76.7% | 88.4% of 301 | ≥50% support |
| KEGG | K18655 | DDX19, DBP5 — Messenger RNA biogenesis | 238 / 347 | 68.6% | 95.2% of 250 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Montipora capitata | g25322.t1 | XP_015770767.1 | PREDICTED: ATP-dependent RNA helicase DDX19A-like isoform X1 [Acropora digitifera] | Q61655 ATP-dependent RNA helicase DDX19A OS=Mus musculus OX=10090 G | JBrowse |
| Montipora capitata | g33353.t1 | XP_015770767.1 | PREDICTED: ATP-dependent RNA helicase DDX19A-like isoform X1 [Acropora digitifera] | Q61655 ATP-dependent RNA helicase DDX19A OS=Mus musculus OX=10090 G | JBrowse |
