← Back to the gene family browser
This orthogroup contains 313 genes from 143 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 313 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR23326 | CCR4 NOT-RELATED | 268 / 313 | 85.6% | 99.6% of 269 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 272 / 313 | 86.9% | 99.6% of 273 | ≥80% support |
| GO | GO:0000289 Biological Process | nuclear-transcribed mRNA poly(A) tail shortening | 268 / 313 | 85.6% | 98.2% of 273 | ≥80% support |
| GO | GO:0000932 Cellular Component | P-body | 268 / 313 | 85.6% | 98.2% of 273 | ≥80% support |
| GO | GO:0030015 Cellular Component | CCR4-NOT core complex | 268 / 313 | 85.6% | 98.2% of 273 | ≥80% support |
| Pfam | PF04065 | Not3 — Not1 N-terminal domain, CCR4-Not complex component | 240 / 313 | 76.7% | 88.2% of 272 | ≥50% support |
| Pfam | PF04153 | NOT2_3_5_C — NOT2/NOT3/NOT5 C-terminal | 230 / 313 | 73.5% | 84.6% of 272 | ≥50% support |
| GO | GO:0005634 Cellular Component | nucleus | 241 / 313 | 77.0% | 88.3% of 273 | ≥50% support |
| KEGG | K12580 | CNOT3, NOT3 — Messenger RNA biogenesis | 211 / 313 | 67.4% | 98.6% of 214 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Montipora capitata | g15012.t1 | XP_029212988.2 | CCR4-NOT transcription complex subunit 3-like isoform X3 [Acropora millepora] | O75175 CCR4-NOT transcription complex subunit 3 OS=Homo sapiens OX= | JBrowse |
