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This orthogroup contains 288 genes from 145 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 288 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12858 | RIBOSOME BIOGENESIS PROTEIN | 242 / 288 | 84.0% | 98.8% of 245 | ≥80% support |
| GO | GO:0042254 Biological Process | ribosome biogenesis | 245 / 288 | 85.1% | 98.4% of 249 | ≥80% support |
| GO | GO:0000462 Biological Process | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 242 / 288 | 84.0% | 97.2% of 249 | ≥80% support |
| GO | GO:0000479 Biological Process | endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 242 / 288 | 84.0% | 97.2% of 249 | ≥80% support |
| GO | GO:0003924 Molecular Function | GTPase activity | 242 / 288 | 84.0% | 97.2% of 249 | ≥80% support |
| GO | GO:0005525 Molecular Function | GTP binding | 242 / 288 | 84.0% | 97.2% of 249 | ≥80% support |
| GO | GO:0030688 Cellular Component | preribosome, small subunit precursor | 242 / 288 | 84.0% | 97.2% of 249 | ≥80% support |
| GO | GO:0034511 Molecular Function | U3 snoRNA binding | 242 / 288 | 84.0% | 97.2% of 249 | ≥80% support |
| Pfam | PF04950 | RIBIOP_C — 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal | 222 / 288 | 77.1% | 93.7% of 237 | ≥50% support |
| Pfam | PF08142 | AARP2CN | 193 / 288 | 67.0% | 81.4% of 237 | ≥50% support |
| GO | GO:0005634 Cellular Component | nucleus | 196 / 288 | 68.1% | 78.7% of 249 | ≥50% support |
| KEGG | K14799 | TSR1 — Ribosome biogenesis | 186 / 288 | 64.6% | 96.9% of 192 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Montipora capitata | g19938.t1 | CAH3023579.1 | unnamed protein product [Porites evermanni] | Q5SWD9 Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus OX= | JBrowse |
| Montipora capitata | g19939.t1 | XP_029180849.2 | pre-rRNA-processing protein TSR1 homolog [Acropora millepora] | Q5XGY1 Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis O | JBrowse |
| Montipora capitata | g30703.t1 | XP_029180849.2 | pre-rRNA-processing protein TSR1 homolog [Acropora millepora] | Q5XGY1 Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis O | JBrowse |
