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Support counts the member genes carrying the term. % of genes is that count over all 285 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR13139 | RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN | 254 / 285 | 89.1% | 99.6% of 255 | ≥80% support |
| Pfam | PF21206 | Roquin_1_2-like_ROQ — Roquin 1/2-like, ROQ domain | 235 / 285 | 82.5% | 94.0% of 250 | ≥80% support |
| Pfam | PF18386 | ROQ_II — Roquin II domain | 233 / 285 | 81.8% | 93.2% of 250 | ≥80% support |
| GO | GO:0000209 Biological Process | protein polyubiquitination | 254 / 285 | 89.1% | 99.6% of 255 | ≥80% support |
| GO | GO:0000288 Biological Process | nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | 254 / 285 | 89.1% | 99.6% of 255 | ≥80% support |
| GO | GO:0003725 Molecular Function | double-stranded RNA binding | 254 / 285 | 89.1% | 99.6% of 255 | ≥80% support |
| GO | GO:0003729 Molecular Function | mRNA binding | 254 / 285 | 89.1% | 99.6% of 255 | ≥80% support |
| GO | GO:0006511 Biological Process | ubiquitin-dependent protein catabolic process | 254 / 285 | 89.1% | 99.6% of 255 | ≥80% support |
| GO | GO:0010494 Cellular Component | cytoplasmic stress granule | 254 / 285 | 89.1% | 99.6% of 255 | ≥80% support |
| GO | GO:0035613 Molecular Function | RNA stem-loop binding | 254 / 285 | 89.1% | 99.6% of 255 | ≥80% support |
| GO | GO:0061630 Molecular Function | ubiquitin protein ligase activity | 254 / 285 | 89.1% | 99.6% of 255 | ≥80% support |
| Pfam | PF14634 | zf-RING_5 — zinc-RING finger domain | 194 / 285 | 68.1% | 77.6% of 250 | ≥50% support |
| Pfam | PF00642 | zf-CCCH — Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 178 / 285 | 62.5% | 71.2% of 250 | ≥50% support |
| GO | GO:0046872 Molecular Function | metal ion binding | 225 / 285 | 79.0% | 88.2% of 255 | ≥50% support |
| KEGG | K15690 | RC3H — Ubiquitin system | 186 / 285 | 65.3% | 98.9% of 188 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Montipora capitata | g7212.t1 | XP_029211951.2 | uncharacterized protein LOC114975854 isoform X2 [Acropora millepora] | Q4VGL6 Roquin-1 OS=Mus musculus OX=10090 GN=Rc3h1 PE=1 SV=1 | JBrowse |
