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This orthogroup contains 236 genes from 135 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 236 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| GO | GO:0003676 Molecular Function | nucleic acid binding | 196 / 236 | 83.1% | 100.0% of 196 | ≥80% support |
| GO | GO:0008270 Molecular Function | zinc ion binding | 195 / 236 | 82.6% | 99.5% of 196 | ≥80% support |
| PANTHER | PTHR46543 | ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 7 | 175 / 236 | 74.2% | 95.1% of 184 | ≥50% support |
| Pfam | PF00098 | zf-CCHC — Zinc knuckle | 186 / 236 | 78.8% | 98.9% of 188 | ≥50% support |
| GO | GO:0003723 Molecular Function | RNA binding | 176 / 236 | 74.6% | 89.8% of 196 | ≥50% support |
| GO | GO:0031499 Cellular Component | TRAMP complex | 175 / 236 | 74.2% | 89.3% of 196 | ≥50% support |
| GO | GO:0043629 Biological Process | obsolete ncRNA polyadenylation | 175 / 236 | 74.2% | 89.3% of 196 | ≥50% support |
| GO | GO:0071031 Biological Process | nuclear mRNA surveillance of mRNA 3'-end processing | 175 / 236 | 74.2% | 89.3% of 196 | ≥50% support |
| GO | GO:0071035 Biological Process | nuclear polyadenylation-dependent rRNA catabolic process | 175 / 236 | 74.2% | 89.3% of 196 | ≥50% support |
| GO | GO:0071036 Biological Process | nuclear polyadenylation-dependent snoRNA catabolic process | 175 / 236 | 74.2% | 89.3% of 196 | ≥50% support |
| GO | GO:0071037 Biological Process | nuclear polyadenylation-dependent snRNA catabolic process | 175 / 236 | 74.2% | 89.3% of 196 | ≥50% support |
| GO | GO:0071038 Biological Process | TRAMP-dependent tRNA surveillance pathway | 175 / 236 | 74.2% | 89.3% of 196 | ≥50% support |
| GO | GO:0071039 Biological Process | nuclear polyadenylation-dependent CUT catabolic process | 175 / 236 | 74.2% | 89.3% of 196 | ≥50% support |
| KEGG | K12597 | AIR1_2 — Transfer RNA biogenesis | 137 / 236 | 58.1% | 99.3% of 138 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| No member of this family matches the current filter. | |||||
