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This orthogroup contains 215 genes from 143 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 215 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR10535 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 | 190 / 215 | 88.4% | 100.0% of 190 | ≥80% support |
| Pfam | PF01191 | RNA_pol_Rpb5_C — RNA polymerase Rpb5, C-terminal domain | 175 / 215 | 81.4% | 91.6% of 191 | ≥80% support |
| Pfam | PF03871 | RNA_pol_Rpb5_N — RNA polymerase Rpb5, N-terminal domain | 175 / 215 | 81.4% | 91.6% of 191 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 191 / 215 | 88.8% | 100.0% of 191 | ≥80% support |
| GO | GO:0003899 Molecular Function | DNA-directed 5'-3' RNA polymerase activity | 191 / 215 | 88.8% | 100.0% of 191 | ≥80% support |
| GO | GO:0006351 Biological Process | DNA-templated transcription | 191 / 215 | 88.8% | 100.0% of 191 | ≥80% support |
| GO | GO:0001054 Molecular Function | RNA polymerase I activity | 190 / 215 | 88.4% | 99.5% of 191 | ≥80% support |
| GO | GO:0001055 Molecular Function | RNA polymerase II activity | 190 / 215 | 88.4% | 99.5% of 191 | ≥80% support |
| GO | GO:0001056 Molecular Function | RNA polymerase III activity | 190 / 215 | 88.4% | 99.5% of 191 | ≥80% support |
| GO | GO:0005665 Cellular Component | RNA polymerase II, core complex | 190 / 215 | 88.4% | 99.5% of 191 | ≥80% support |
| GO | GO:0005666 Cellular Component | RNA polymerase III complex | 190 / 215 | 88.4% | 99.5% of 191 | ≥80% support |
| GO | GO:0005736 Cellular Component | RNA polymerase I complex | 190 / 215 | 88.4% | 99.5% of 191 | ≥80% support |
| KEGG | K03013 | RPABC1, RPB5, POLR2E — DNA repair and recombination proteins | 155 / 215 | 72.1% | 98.7% of 157 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Montipora capricornis | XP_068727576.1 | XP_029213303.1 | DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X1 [Acropora millepora] | Q5R587 DNA-directed RNA polymerases I, II, and III subunit RPABC1 O | JBrowse |
