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This orthogroup contains 218 genes from 141 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 218 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR13989 | REPLICATION PROTEIN A-RELATED | 188 / 218 | 86.2% | 99.5% of 189 | ≥80% support |
| GO | GO:0000724 Biological Process | double-strand break repair via homologous recombination | 188 / 218 | 86.2% | 99.5% of 189 | ≥80% support |
| GO | GO:0000781 Cellular Component | chromosome, telomeric region | 188 / 218 | 86.2% | 99.5% of 189 | ≥80% support |
| GO | GO:0003697 Molecular Function | single-stranded DNA binding | 188 / 218 | 86.2% | 99.5% of 189 | ≥80% support |
| GO | GO:0005662 Cellular Component | DNA replication factor A complex | 188 / 218 | 86.2% | 99.5% of 189 | ≥80% support |
| GO | GO:0006260 Biological Process | DNA replication | 188 / 218 | 86.2% | 99.5% of 189 | ≥80% support |
| GO | GO:0006289 Biological Process | nucleotide-excision repair | 188 / 218 | 86.2% | 99.5% of 189 | ≥80% support |
| GO | GO:0035861 Cellular Component | site of double-strand break | 188 / 218 | 86.2% | 99.5% of 189 | ≥80% support |
| Pfam | PF08784 | RPA_C — Replication protein A C terminal | 170 / 218 | 78.0% | 97.7% of 174 | ≥50% support |
| GO | GO:0003677 Molecular Function | DNA binding | 135 / 218 | 61.9% | 71.4% of 189 | ≥50% support |
| GO | GO:0006310 Biological Process | DNA recombination | 135 / 218 | 61.9% | 71.4% of 189 | ≥50% support |
| GO | GO:0005634 Cellular Component | nucleus | 134 / 218 | 61.5% | 70.9% of 189 | ≥50% support |
| GO | GO:0006281 Biological Process | DNA repair | 134 / 218 | 61.5% | 70.9% of 189 | ≥50% support |
| KEGG | K10739 | RFA2, RPA2 — DNA repair and recombination proteins | 160 / 218 | 73.4% | 99.4% of 161 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Montipora efflorescens | ENSTIFP00000000369.1 | XP_015753063.1 | PREDICTED: replication protein A 32 kDa subunit-A-like [Acropora digitifera] | Q6IP18 Replication protein A 32 kDa subunit-A OS=Xenopus laevis OX= | JBrowse |
| Montipora efflorescens | ENSTIFP00000000375.1 | XP_029193050.1 | replication protein A 32 kDa subunit-A-like isoform X2 [Acropora millepora] | Q6IP18 Replication protein A 32 kDa subunit-A OS=Xenopus laevis OX= | JBrowse |
| Montipora efflorescens | ENSTIFP00000000399.1 | XP_029193050.1 | replication protein A 32 kDa subunit-A-like isoform X2 [Acropora millepora] | A1L2H9 Replication protein A 32 kDa subunit-B OS=Xenopus laevis OX= | JBrowse |
| Montipora efflorescens | ENSTIFP00000000405.1 | XP_029193050.1 | replication protein A 32 kDa subunit-A-like isoform X2 [Acropora millepora] | Q6IP18 Replication protein A 32 kDa subunit-A OS=Xenopus laevis OX= | JBrowse |
| Montipora efflorescens | ENSTIFP00000000416.1 | XP_029193043.1 | replication protein A 32 kDa subunit-A-like isoform X1 [Acropora millepora] | Q6DFS2 Replication protein A 32 kDa subunit OS=Xenopus tropicalis O | JBrowse |
