← Back to the gene family browser
Support counts the member genes carrying the term. % of genes is that count over all 119 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR20971 | U6 SNRNA-ASSOCIATED PROTEIN | 108 / 119 | 90.8% | 100.0% of 108 | ≥80% support |
| Pfam | PF01423 | LSM | 108 / 119 | 90.8% | 100.0% of 108 | ≥80% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 108 / 119 | 90.8% | 100.0% of 108 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 108 / 119 | 90.8% | 100.0% of 108 | ≥80% support |
| GO | GO:0005688 Cellular Component | U6 snRNP | 108 / 119 | 90.8% | 100.0% of 108 | ≥80% support |
| GO | GO:0046540 Cellular Component | U4/U6 x U5 tri-snRNP complex | 108 / 119 | 90.8% | 100.0% of 108 | ≥80% support |
| GO | GO:1990726 Cellular Component | Lsm1-7-Pat1 complex | 108 / 119 | 90.8% | 100.0% of 108 | ≥80% support |
| KEGG | K12624 | LSM5 — Spliceosome | 102 / 119 | 85.7% | 99.0% of 103 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Micromussa lordhowensis | ENSSYXP00000025239.1 | XP_029180051.1 | U6 snRNA-associated Sm-like protein LSm5 [Acropora millepora] | Q2HJH0 U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus OX=99 | JBrowse |
| Micromussa lordhowensis | ENSSYXP00000025252.1 | XP_029180051.1 | U6 snRNA-associated Sm-like protein LSm5 [Acropora millepora] | Q2HJH0 U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus OX=99 | JBrowse |
