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This orthogroup contains 187 genes from 141 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 187 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR21297 | DNA-DIRECTED RNA POLYMERASE II | 167 / 187 | 89.3% | 99.4% of 168 | ≥80% support |
| Pfam | PF03874 | RNA_pol_Rpb4 — RNA polymerase Rpb4 | 168 / 187 | 89.8% | 100.0% of 168 | ≥80% support |
| GO | GO:0000166 Molecular Function | nucleotide binding | 170 / 187 | 90.9% | 100.0% of 170 | ≥80% support |
| GO | GO:0044237 Biological Process | obsolete cellular metabolic process | 170 / 187 | 90.9% | 100.0% of 170 | ≥80% support |
| GO | GO:0006352 Biological Process | DNA-templated transcription initiation | 168 / 187 | 89.8% | 98.8% of 170 | ≥80% support |
| GO | GO:0030880 Cellular Component | RNA polymerase complex | 168 / 187 | 89.8% | 98.8% of 170 | ≥80% support |
| GO | GO:0005665 Cellular Component | RNA polymerase II, core complex | 167 / 187 | 89.3% | 98.2% of 170 | ≥80% support |
| GO | GO:0006367 Biological Process | transcription initiation at RNA polymerase II promoter | 167 / 187 | 89.3% | 98.2% of 170 | ≥80% support |
| GO | GO:0031369 Molecular Function | translation initiation factor binding | 167 / 187 | 89.3% | 98.2% of 170 | ≥80% support |
| GO | GO:0034402 Biological Process | obsolete recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex | 167 / 187 | 89.3% | 98.2% of 170 | ≥80% support |
| KEGG | K03012 | RPB4, POLR2D — DNA repair and recombination proteins | 145 / 187 | 77.5% | 100.0% of 145 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Muricea muricata | BRAKERXEIP00000047851.1 | CAB3998248.1 | DNA-directed RNA polymerase II subunit RPB4 [Paramuricea clavata] | Q1JQ91 DNA-directed RNA polymerase II subunit RPB4 OS=Bos taurus OX | JBrowse |
