← Back to the gene family browser
Support counts the member genes carrying the term. % of genes is that count over all 6,131 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 5534 / 6,131 | 90.3% | 100.0% of 5,537 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 5541 / 6,131 | 90.4% | 99.9% of 5,546 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 5489 / 6,131 | 89.5% | 99.0% of 5,546 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 5411 / 6,131 | 88.3% | 97.6% of 5,546 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 4181 / 6,131 | 68.2% | 75.4% of 5,546 | ≥50% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 4143 / 6,131 | 67.6% | 74.7% of 5,546 | ≥50% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 3711 / 6,131 | 60.5% | 66.9% of 5,546 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Mastigias papua | BRAKERKYLP00000000398.1 | CAR62457.1 | putative Pdx/Xlox homeodomain transcription factor, partial [Turritopsis dohrnii] | P17138 Homeobox protein HTR-A2 (Fragment) OS=Helobdella triserialis | JBrowse |
| Mastigias papua | BRAKERKYLP00000001103.1 | none | – | JBrowse | |
| Mastigias papua | BRAKERKYLP00000001324.1 | AAD32576.1 | Scox-2 homeodomain protein, partial [Cassiopea xamachana] | P10284 Homeobox protein Hox-B4 OS=Mus musculus OX=10090 GN=Hoxb4 PE | JBrowse |
| Mastigias papua | BRAKERKYLP00000005220.1 | TMS36027.1 | hypothetical protein L596_003294 [Steinernema carpocapsae] | P56407 Homeobox protein ceh-9 OS=Caenorhabditis elegans OX=6239 GN= | JBrowse |
| Mastigias papua | BRAKERKYLP00000006604.1 | CAB88387.1 | homeoprotein [Hydra vulgaris] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
| Mastigias papua | BRAKERKYLP00000012165.1 | XP_012566941.2 | homeobox protein mab-5-like [Hydra vulgaris] | P09070 Homeobox protein Hox-B4 OS=Xenopus laevis OX=8355 GN=hoxb4 P | JBrowse |
| Mastigias papua | BRAKERKYLP00000012209.1 | ACM62736.1 | Mox homeodomain transcription factor protein [Clytia hemisphaerica] | F1Q4R9 Homeobox protein MOX-1 OS=Danio rerio OX=7955 GN=meox1 PE=2 | JBrowse |
| Mastigias papua | BRAKERKYLP00000012613.1 | CAA72534.1 | Cn-ems protein [Hydractinia symbiolongicarpus] | Q6GLB9 Homeobox protein EMX1 OS=Xenopus tropicalis OX=8364 GN=emx1 | JBrowse |
| Mastigias papua | BRAKERKYLP00000012780.1 | none | – | JBrowse | |
| Mastigias papua | BRAKERKYLP00000012874.1 | AAD32577.1 | Scox-3 homeodomain protein, partial [Cassiopea xamachana] | P81192 Homeobox protein Hox-A4 (Fragment) OS=Lineus sanguineus OX=1 | JBrowse |
| Mastigias papua | BRAKERKYLP00000012968.1 | XP_029954228.1 | homeobox protein HMX3-B-like [Salarias fasciatus] | Q504H8 Homeobox protein HMX3 OS=Danio rerio OX=7955 GN=hmx3 PE=2 SV | JBrowse |
| Mastigias papua | BRAKERKYLP00000013939.1 | AAX58756.1 | homeodomain protein Msx [Podocoryna carnea] | P15857 Homeobox protein H17 (Fragment) OS=Apis mellifera OX=7460 PE | JBrowse |
| Mastigias papua | BRAKERKYLP00000015230.1 | CAA57211.1 | hox1 [Podocoryna carnea] | Q1KL10 Homeobox protein Hox-A1a OS=Takifugu rubripes OX=31033 GN=ho | JBrowse |
| Mastigias papua | BRAKERKYLP00000015340.1 | ACT36587.1 | Anthox6a [Nematostella vectensis] | P34684 Homeobox protein lin-39 OS=Caenorhabditis elegans OX=6239 GN | JBrowse |
| Mastigias papua | BRAKERKYLP00000017327.1 | CAI9620579.1 | unnamed protein product [Staurois parvus] | Q99801 Homeobox protein Nkx-3.1 OS=Homo sapiens OX=9606 GN=NKX3-1 P | JBrowse |
| Mastigias papua | BRAKERKYLP00000017710.1 | UES72736.1 | Homeobox domain-containing protein [Rhopilema esculentum] | O43763 T-cell leukemia homeobox protein 2 OS=Homo sapiens OX=9606 G | JBrowse |
| Mastigias papua | BRAKERKYLP00000017828.1 | XP_014289294.1 | homeobox protein H55 [Halyomorpha halys] | G5EC89 Homeobox protein ceh-17 OS=Caenorhabditis elegans OX=6239 GN | JBrowse |
| Mastigias papua | BRAKERKYLP00000023290.1 | KAG4074423.1 | hypothetical protein HA402_000402 [Bradysia odoriphaga] | Q4V5A3 Homeobox protein unplugged OS=Drosophila melanogaster OX=722 | JBrowse |
| Mastigias papua | BRAKERKYLP00000023519.1 | KRX45494.1 | Homeobox protein ceh-31 [Trichinella murrelli] | Q24255 Homeobox protein B-H1 OS=Drosophila melanogaster OX=7227 GN= | JBrowse |
| Mastigias papua | BRAKERKYLP00000025070.1 | XP_013792320.1 | homeobox protein ceh-1-like, partial [Limulus polyphemus] | Q75W95 NK1 transcription factor-related protein 1 OS=Danio rerio OX | JBrowse |
