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This orthogroup contains 297 genes from 144 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 297 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR11118 | UNCHARACTERIZED | 255 / 297 | 85.9% | 99.6% of 256 | ≥80% support |
| Pfam | PF01139 | RtcB | 255 / 297 | 85.9% | 99.6% of 256 | ≥80% support |
| GO | GO:0006396 Biological Process | RNA processing | 259 / 297 | 87.2% | 99.6% of 260 | ≥80% support |
| GO | GO:0008452 Molecular Function | RNA ligase activity | 259 / 297 | 87.2% | 99.6% of 260 | ≥80% support |
| GO | GO:0000971 Biological Process | obsolete tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate | 255 / 297 | 85.9% | 98.1% of 260 | ≥80% support |
| GO | GO:0003972 Molecular Function | RNA ligase (ATP) activity | 255 / 297 | 85.9% | 98.1% of 260 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 241 / 297 | 81.1% | 92.7% of 260 | ≥80% support |
| GO | GO:0072669 Cellular Component | tRNA-splicing ligase complex | 241 / 297 | 81.1% | 92.7% of 260 | ≥80% support |
| KEGG | K14415 | RTCB, rtcB — Transfer RNA biogenesis | 169 / 297 | 56.9% | 99.4% of 170 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Mastigias papua | BRAKERKYLP00000015504.1 | XP_045626362.1 | RNA-splicing ligase RtcB homolog [Procambarus clarkii] | Q5E9T9 RNA-splicing ligase RtcB homolog OS=Bos taurus OX=9913 GN=RT | JBrowse |
| Mastigias papua | BRAKERKYLP00000015803.1 | XP_043086683.1 | RNA-splicing ligase RtcB homolog [Puntigrus tetrazona] | Q6NZS4 RNA-splicing ligase RtcB homolog OS=Danio rerio OX=7955 GN=r | JBrowse |
