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This orthogroup contains 255 genes from 138 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 255 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR15592 | MATRIN 3/NUCLEAR PROTEIN 220-RELATED | 212 / 255 | 83.1% | 100.0% of 212 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 217 / 255 | 85.1% | 100.0% of 217 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 213 / 255 | 83.5% | 98.2% of 217 | ≥80% support |
| GO | GO:0003729 Molecular Function | mRNA binding | 212 / 255 | 83.1% | 97.7% of 217 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 212 / 255 | 83.1% | 97.7% of 217 | ≥80% support |
| GO | GO:0043484 Biological Process | regulation of RNA splicing | 212 / 255 | 83.1% | 97.7% of 217 | ≥80% support |
| Pfam | PF11835 | RRM_8 — RRM-like domain | 193 / 255 | 75.7% | 90.6% of 213 | ≥50% support |
| Pfam | PF13893 | RRM_5 — RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 177 / 255 | 69.4% | 83.1% of 213 | ≥50% support |
| Pfam | PF00076 | RRM_1 — RNA recognition motif | 176 / 255 | 69.0% | 82.6% of 213 | ≥50% support |
| GO | GO:0006397 Biological Process | mRNA processing | 133 / 255 | 52.2% | 61.3% of 217 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Mastigias papua | BRAKERKYLP00000006976.1 | XP_031564300.1 | polypyrimidine tract-binding protein 2-like [Actinia tenebrosa] | P17225 Polypyrimidine tract-binding protein 1 OS=Mus musculus OX=10 | JBrowse |
