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This orthogroup contains 232 genes from 141 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 232 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR11208 | RNA-BINDING PROTEIN RELATED | 186 / 232 | 80.2% | 98.9% of 188 | ≥80% support |
| GO | GO:0003729 Molecular Function | mRNA binding | 186 / 232 | 80.2% | 95.4% of 195 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 186 / 232 | 80.2% | 95.4% of 195 | ≥80% support |
| GO | GO:0048024 Biological Process | regulation of mRNA splicing, via spliceosome | 186 / 232 | 80.2% | 95.4% of 195 | ≥80% support |
| Pfam | PF16275 | SF1-HH — Splicing factor 1 helix-hairpin domain | 174 / 232 | 75.0% | 90.2% of 193 | ≥50% support |
| Pfam | PF00098 | zf-CCHC — Zinc knuckle | 168 / 232 | 72.4% | 87.1% of 193 | ≥50% support |
| Pfam | PF00013 | KH_1 — KH domain | 151 / 232 | 65.1% | 78.2% of 193 | ≥50% support |
| GO | GO:0003723 Molecular Function | RNA binding | 185 / 232 | 79.7% | 94.9% of 195 | ≥50% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 179 / 232 | 77.2% | 91.8% of 195 | ≥50% support |
| GO | GO:0008270 Molecular Function | zinc ion binding | 175 / 232 | 75.4% | 89.7% of 195 | ≥50% support |
| KEGG | K13095 | SF1 — Spliceosome | 157 / 232 | 67.7% | 94.6% of 166 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Mastigias papua | BRAKERKYLP00000005709.1 | XP_046864396.1 | splicing factor 1-like [Xenia sp. Carnegie-2017] | Q64213 Splicing factor 1 OS=Mus musculus OX=10090 GN=Sf1 PE=1 SV=6 | JBrowse |
