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This orthogroup contains 216 genes from 139 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 216 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR14440 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49 | 189 / 216 | 87.5% | 100.0% of 189 | ≥80% support |
| Pfam | PF06870 | RNA_pol_I_A49 — A49-like RNA polymerase I associated factor | 189 / 216 | 87.5% | 100.0% of 189 | ≥80% support |
| GO | GO:0001188 Biological Process | RNA polymerase I preinitiation complex assembly | 189 / 216 | 87.5% | 100.0% of 189 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 189 / 216 | 87.5% | 100.0% of 189 | ≥80% support |
| GO | GO:0005736 Cellular Component | RNA polymerase I complex | 189 / 216 | 87.5% | 100.0% of 189 | ≥80% support |
| GO | GO:0006351 Biological Process | DNA-templated transcription | 189 / 216 | 87.5% | 100.0% of 189 | ≥80% support |
| GO | GO:0006362 Biological Process | transcription elongation by RNA polymerase I | 189 / 216 | 87.5% | 100.0% of 189 | ≥80% support |
| KEGG | K03005 | RPA49, POLR1E — Transcription machinery | 137 / 216 | 63.4% | 99.3% of 138 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Mastigias papua | BRAKERKYLP00000000859.1 | XP_020917736.1 | DNA-directed RNA polymerase I subunit RPA49 isoform X4 [Exaiptasia diaphana] | Q9GZS1 DNA-directed RNA polymerase I subunit RPA49 OS=Homo sapiens | JBrowse |
