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This orthogroup contains 531 genes from 145 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 531 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12620 | U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT | 447 / 531 | 84.2% | 100.0% of 447 | ≥80% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 447 / 531 | 84.2% | 100.0% of 447 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 447 / 531 | 84.2% | 100.0% of 447 | ≥80% support |
| GO | GO:0005681 Cellular Component | spliceosomal complex | 447 / 531 | 84.2% | 100.0% of 447 | ≥80% support |
| GO | GO:0030628 Molecular Function | pre-mRNA 3'-splice site binding | 447 / 531 | 84.2% | 100.0% of 447 | ≥80% support |
| GO | GO:0089701 Cellular Component | U2AF complex | 447 / 531 | 84.2% | 100.0% of 447 | ≥80% support |
| GO | GO:0046872 Molecular Function | metal ion binding | 441 / 531 | 83.1% | 98.7% of 447 | ≥80% support |
| Pfam | PF00642 | zf-CCCH — Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 421 / 531 | 79.3% | 98.1% of 429 | ≥50% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 423 / 531 | 79.7% | 94.6% of 447 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Nematostella vectensis | XP_032234897.1 | XP_032234897.1 | splicing factor U2AF 35 kDa subunit isoform X1 [Nematostella vectensis] | A1A4K8 Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN | JBrowse |
| Nematostella vectensis | XP_032234898.1 | XP_032234898.1 | splicing factor U2AF 35 kDa subunit isoform X2 [Nematostella vectensis] | A1A4K8 Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN | JBrowse |
| Nematostella vectensis | XP_048587945.1 | XP_048587945.1 | U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 [Nematostella vectensis] | Q62377 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa s | JBrowse |
