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This orthogroup contains 305 genes from 140 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 305 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12515 | STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 4-RELATED | 273 / 305 | 89.5% | 100.0% of 273 | ≥80% support |
| Pfam | PF00536 | SAM_1 — SAM domain (Sterile alpha motif) | 250 / 305 | 82.0% | 99.6% of 251 | ≥80% support |
| GO | GO:0000289 Biological Process | nuclear-transcribed mRNA poly(A) tail shortening | 273 / 305 | 89.5% | 100.0% of 273 | ≥80% support |
| GO | GO:0000932 Cellular Component | P-body | 273 / 305 | 89.5% | 100.0% of 273 | ≥80% support |
| GO | GO:0003729 Molecular Function | mRNA binding | 273 / 305 | 89.5% | 100.0% of 273 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 263 / 305 | 86.2% | 96.3% of 273 | ≥80% support |
| GO | GO:0017148 Biological Process | negative regulation of translation | 263 / 305 | 86.2% | 96.3% of 273 | ≥80% support |
| GO | GO:0030371 Molecular Function | translation repressor activity | 263 / 305 | 86.2% | 96.3% of 273 | ≥80% support |
| GO | GO:0005515 Molecular Function | protein binding | 254 / 305 | 83.3% | 93.0% of 273 | ≥80% support |
| GO | GO:0043488 Biological Process | regulation of mRNA stability | 168 / 305 | 55.1% | 61.5% of 273 | ≥50% support |
| KEGG | K27396 | SMG — Messenger RNA biogenesis | 240 / 305 | 78.7% | 99.2% of 242 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Nematostella vectensis | XP_032221815.2 | XP_032221815.2 | protein Smaug homolog 1 [Nematostella vectensis] | Q8CBY1 Protein Smaug homolog 1 OS=Mus musculus OX=10090 GN=Samd4a P | JBrowse |
| Nematostella vectensis | XP_032221816.2 | XP_032221815.2 | protein Smaug homolog 1 [Nematostella vectensis] | Q8CBY1 Protein Smaug homolog 1 OS=Mus musculus OX=10090 GN=Samd4a P | JBrowse |
| Nematostella vectensis | XP_032221817.2 | XP_032221815.2 | protein Smaug homolog 1 [Nematostella vectensis] | Q8CBY1 Protein Smaug homolog 1 OS=Mus musculus OX=10090 GN=Samd4a P | JBrowse |
