← Back to the gene family browser
Support counts the member genes carrying the term. % of genes is that count over all 268 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR23101 | RAB GDP/GTP EXCHANGE FACTOR | 223 / 268 | 83.2% | 97.4% of 229 | ≥80% support |
| Pfam | PF02204 | VPS9 | 215 / 268 | 80.2% | 92.7% of 232 | ≥80% support |
| GO | GO:0005085 Molecular Function | guanyl-nucleotide exchange factor activity | 223 / 268 | 83.2% | 96.1% of 232 | ≥80% support |
| GO | GO:0005829 Cellular Component | cytosol | 223 / 268 | 83.2% | 96.1% of 232 | ≥80% support |
| GO | GO:0016192 Biological Process | vesicle-mediated transport | 223 / 268 | 83.2% | 96.1% of 232 | ≥80% support |
| GO | GO:0030139 Cellular Component | endocytic vesicle | 223 / 268 | 83.2% | 96.1% of 232 | ≥80% support |
| GO | GO:0031267 Molecular Function | small GTPase binding | 223 / 268 | 83.2% | 96.1% of 232 | ≥80% support |
| Pfam | PF18151 | DUF5601 | 206 / 268 | 76.9% | 88.8% of 232 | ≥50% support |
| Pfam | PF01754 | zf-A20 — A20-like zinc finger | 182 / 268 | 67.9% | 78.5% of 232 | ≥50% support |
| GO | GO:0003677 Molecular Function | DNA binding | 182 / 268 | 67.9% | 78.5% of 232 | ≥50% support |
| GO | GO:0008270 Molecular Function | zinc ion binding | 182 / 268 | 67.9% | 78.5% of 232 | ≥50% support |
| KEGG | K20131 | RABGEF1 — Membrane trafficking | 176 / 268 | 65.7% | 95.7% of 184 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Nematostella vectensis | XP_001635384.2 | XP_001635384.2 | rab5 GDP/GTP exchange factor isoform X2 [Nematostella vectensis] | O18973 Rab5 GDP/GTP exchange factor OS=Bos taurus OX=9913 GN=RABGEF | JBrowse |
| Nematostella vectensis | XP_048587085.1 | XP_048587085.1 | rab5 GDP/GTP exchange factor isoform X1 [Nematostella vectensis] | O18973 Rab5 GDP/GTP exchange factor OS=Bos taurus OX=9913 GN=RABGEF | JBrowse |
