Species Overview

Species Overview

This module lists all 326 cnidarian species for which an assembly is recorded in CnidoSite. Of these, 145 have a gene-model table (protein-coding gene coordinates) and are therefore the genomes queried by the gene-level modules (Gene Search, InterPro, Pfam, KEGG, GO, gene family, expression and so on). The remaining 181 have no gene models: 178 are assembly-only, and 3 carry functional annotation (GO/InterPro/Pfam/PANTHER/KEGG) but no gene-model table, so they appear in those modules but not in Gene Search. All three states are marked below.

Assembly-level counts. Chromosome 97 · Complete Genome 1 · Contig 55 · Scaffold 173. Chromosome-level assemblies (chromosome + complete genome) therefore number 98.
Why do the counts differ between pages? The assembly-level breakdown above describes every assembly deposited for the phylum (including assembly-only records). Modules that need gene models — annotation, orthology, expression, single-cell, proteomics — can only use the 145 genomes that have gene models, so those pages report a smaller denominator. Wherever a paper figure quotes a different total this is the reason, and the per-page denominator is now stated on the page itself.

Showing the assembly record for Bergia puertoricense only (deep link species=Bergia_puertoricense). show all species

Show: All species (326)With gene models (145)Without gene models (181)

Class	Species Latin Name	NCBI Taxonomy ID	Size (Mb)	Assembly Level	Released Year	Pubmed ID	Gene annotation
Hexacorallia	Bergia puertoricense	2608285	463.26	Scaffold	2022	37868064	assembly only not in gene-level modules