Single-cell Data

In this module, a brief summary of single-cell RNA-seq datasets are listed as follows.

Species · show all species
ClassSpeciesProjectStudy AccessionEmb/OrgStageNumber of CellsReferencesExplore
ScyphozoaAurelia coeruleaPRJNA1011858SRP458012gastrodermisDevelopmental stages10000-no atlas
ScyphozoaAurelia coeruleaPRJNA1014937SRP468849whole organismDevelopmental stagesnot available38125018no atlas
ScyphozoaAurelia coeruleaPRJNA1041967SRP472811ephryaoceanacid treatment42,461Linkno atlas
ScyphozoaAurelia coeruleaPRJNA1042913SRP473863podocystspodocyst-forming polyps17,97838133544no atlas
ScyphozoaAurelia coeruleaPRJNA1045549SRP474384whole animalmedusa18,93639009560no atlas
ScyphozoaAurelia coeruleaPRJNA1287281SRP598586RhopaliumAdult tissues/organs--no atlas
ScyphozoaAurelia coeruleaPRJNA884642SRP400888Whole adultsDevelopmental stages45,286Linkno atlas

Why do only some datasets have an atlas? Showing all species → only Aurelia coerulea; this species has 7 dataset(s). This table indexes 7 datasets across 1 species; an interactive projection is provided for the 0 datasets whose source study deposited a processed UMAP embedding and a cell-type marker table. For the others CnidoSite gives the sample metadata, the BioProject/SRA links and the original reference, but cannot recompute an atlas from raw reads. Open the Cell Atlas →
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