Single-cell Data

In this module, a brief summary of single-cell RNA-seq datasets are listed as follows.

Species · show all species
ClassSpeciesProjectStudy AccessionEmb/OrgStageNumber of CellsReferencesExplore
HexacoralliaNematostella vectensisPRJNA1063743SRP4832472 month animalAdult tissues/organs2,03239151009Atlas · Markers
HexacoralliaNematostella vectensisPRJNA1217498SRP560807body wall with mesenteries6-8 weeks adults--Atlas · Markers
HexacoralliaNematostella vectensisPRJNA1249376SRP577940whole-adultAdult tissues/organs~60,000-Atlas · Markers
HexacoralliaNematostella vectensisPRJNA1291744SRP601047embryoDevelopmental stages--Atlas · Markers
HexacoralliaNematostella vectensisPRJNA1327231SRP619054aggregatesEmbryos treated--Atlas · Markers
HexacoralliaNematostella vectensisPRJNA1331670SRP622332neoplasmAdult tissues/organs--Atlas · Markers
HexacoralliaNematostella vectensisPRJNA1331670SRP622332tentacleAdult tissues/organs--Atlas · Markers
HexacoralliaNematostella vectensisPRJNA645134SRP271116Bodywall, Mesentery, Pharynx, TentacleWhole organism2,03239151009Atlas · Markers
HexacoralliaNematostella vectensisPRJNA823660SRP367642Blastula-gastrula intermediateDevelopmental stages55,04236130520Atlas · Markers
HexacoralliaNematostella vectensisPRJNA903823SRP408911Gastrula Cellsnervous system37244953Atlas · Markers

Why do only some datasets have an atlas? Showing all species → only Nematostella vectensis; this species has 10 dataset(s). This table indexes 10 datasets across 1 species; an interactive projection is provided for the 10 datasets whose source study deposited a processed UMAP embedding and a cell-type marker table. For the others CnidoSite gives the sample metadata, the BioProject/SRA links and the original reference, but cannot recompute an atlas from raw reads. Open the Cell Atlas →
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