This page covers the genome assembly of Pachycerianthus multiplicatus. For every other data type available for this species (transcriptome, single-cell, proteome, epigenome, metagenome, phenotype, palaeobiology, gene families, JBrowse…), open the Species Portal, or compare it against all 326 species in the coverage matrix.
 Data Coverage & Visualisation

CnidoSite holds 2 of the 15 data types it covers for Pachycerianthus multiplicatus. Each available entry links straight into the corresponding module or viewer, already filtered to this species; the greyed-out entries have no data for it in the current release. The full species × data-type grid is in the coverage matrix.

2 of 15 data types available
Data typeRecordsOpen
Genome assembly✓ availableGenome →BUSCO · TFs / Ubs · Pan-geneset
Mitogenome✓ availableMitogenome →
Gene annotation—Not available
Functional annotation—Not available
Gene family (orthogroup)—Not available
Bulk transcriptome—Not available
Co-expression network—Not available
Single-cell—Not available
Proteome—Not available
Epigenome—Not available
Metagenome—Not available
Phenotype—Not available
Paleobiology—Not available
Transposable elements—Not available
Genome browser—Not available

Links open in a new window. Pachycerianthus multiplicatus · PMULT

 About Pachycerianthus multiplicatus

Pachycerianthus multiplicatus is a tube-dwelling ceriantharian anemone (family Cerianthidae) found in subtidal soft sediments of the north-east Atlantic and the Mediterranean, where it lives in a parchment-like tube that it secretes itself. Ceriantharia is the earliest-diverging lineage of Anthozoa and a key outgroup for cnidarian phylogenetics, which makes this genome a useful addition to the site. The assembly registered here (GCA_984695265.1, 602.6 Mb, 18 chromosomes) was produced by Genoscope as part of the ATLASea programme from PacBio long reads and Arima Hi-C data. It is the alternate haplotype of jaPacMult1; the companion primary assembly is GCA_984588385.1 (672.2 Mb, 19 chromosomes). No gene annotation has been released for either assembly, so this species is currently registered at genome level only: gene models and functional annotation will be added once an annotation becomes available. BUSCO completeness has nonetheless been assessed directly on the assembly, in genome mode with miniprot as the gene predictor: C:92.8% [S:91.8%, D:1.0%], F:2.8%, M:4.4% (n = 3,203; lineage cnidaria_odb12). Two caveats apply to this figure. It comes from genes predicted during the assessment rather than from a deposited protein set, which is how the other species on this site were scored, so it is not strictly comparable with them; and 30.1% of the complete matches contain internal stop codons, a known artefact of miniprot prediction that inflates the completeness estimate somewhat. Note also that taxonomic authorities differ on the placement of Ceriantharia — WoRMS (AphiaID 101013) treats it as an order within Hexacorallia, whereas NCBI (taxid 1531352) places it alongside Hexacorallia and Octocorallia; the site uses the latter treatment here.

 Basic Information
ClassSpeciesNCBI Taxonomy IDAssembly LevelGenBank AssemblyAssembly NameGenome Size (Mb)WGS AccessionSubmitterBioProject
CerianthariaPachycerianthus multiplicatus1531352ChromosomeGCA_984695265.1jaPacMult1.1 alternative haplotype602.64CFIWPK01Genoscope CEAPRJEB114125

 Genome Assembly Information
Chromosome NumberScaffold NumberContig NumberProtein NumberProtein-Coding Gene NumberContig N50Scaffold N50GC content (%)BUSCO completeness
1830351--30032733038124336.5C:92.8%[S:91.8%,D:1.0%],F:2.8%,M:4.4%
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