Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora03560 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
neurosecretory_progenitors 1 XP_029189839.2 (Amil_Amillepora24664) 2.66 31.6 98.9% feature · violin
neurosecretory_progenitors 2 XP_029194563.1 (Amil_Amillepora23336) 2.42 31.3 99.5% feature · violin
neurosecretory_progenitors 3 XP_029187662.1 (Amil_Amillepora09679) 2.17 31.3 100.0% feature · violin
neurosecretory_progenitors 4 XP_029182254.1 (Amil_Amillepora00272) 2.29 31.0 99.3% feature · violin
neurosecretory_progenitors 5 XP_029213956.2 (Amil_Amillepora20324) 2.38 30.2 99.3% feature · violin
neurosecretory_progenitors 6 XP_029213219.1 (Amil_Amillepora22471) 2.40 29.6 98.2% feature · violin
neurosecretory_progenitors 7 XP_029205732.1 (Amil_Amillepora06161) 2.24 29.6 98.4% feature · violin
neurosecretory_progenitors 8 Amil_orphan_6896 not mapped 2.05 29.5 99.5% feature · violin
neurosecretory_progenitors 9 XP_029199841.1 (Amil_Amillepora12950) 1.99 29.5 98.9% feature · violin
neurosecretory_progenitors 10 XP_029194305.1 (Amil_Amillepora25019) 1.69 29.5 99.8% feature · violin
neurosecretory_progenitors 11 Amil_Amillepora26515 not mapped 1.40 29.5 100.0% feature · violin
neurosecretory_progenitors 12 XP_029185001.1 (Amil_Amillepora24471) 1.88 29.3 99.3% feature · violin
neurosecretory_progenitors 13 XP_029193215.1 (Amil_Amillepora02962) 2.36 29.1 98.4% feature · violin
neurosecretory_progenitors 14 XP_029190855.1 (Amil_Amillepora21381) 2.73 29.0 98.4% feature · violin
neurosecretory_progenitors 15 XP_029213122.1 (Amil_Amillepora07089) 1.99 29.0 99.8% feature · violin
neurosecretory_progenitors 16 XP_029192313.1 (Amil_Amillepora02840) 2.11 28.8 98.9% feature · violin
neurosecretory_progenitors 17 XP_029206768.1 (Amil_Amillepora08096) 2.13 28.8 99.8% feature · violin
neurosecretory_progenitors 18 XP_029213148.2 (Amil_Amillepora06100) 2.46 28.8 97.7% feature · violin
neurosecretory_progenitors 19 XP_029190929.1 (Amil_Amillepora14705) 2.05 28.3 99.1% feature · violin
neurosecretory_progenitors 20 XP_029180834.1 (Amil_Amillepora24046) 2.25 28.3 98.6% feature · violin
neurosecretory_progenitors 21 XP_029195141.1 (Amil_Amillepora00650) 2.41 28.2 97.7% feature · violin
neurosecretory_progenitors 22 XP_029188045.2 (Amil_Amillepora06865) 2.14 28.2 98.6% feature · violin
neurosecretory_progenitors 23 Amil_orphan_6244 not mapped 1.81 28.0 99.5% feature · violin
neurosecretory_progenitors 24 XP_029200323.2 (Amil_Amillepora29844) 2.10 27.9 99.1% feature · violin
neurosecretory_progenitors 25 XP_029194650.2 (Amil_Amillepora10093) 2.24 27.9 97.7% feature · violin
neurosecretory_progenitors 26 XP_029201610.1 (Amil_Amillepora16930) 2.31 27.8 96.3% feature · violin
neurosecretory_progenitors 27 Amil_orphan_11174 not mapped 2.41 27.6 94.9% feature · violin
neurosecretory_progenitors 28 XP_029195779.1 (Amil_Amillepora20384) 1.93 27.5 98.6% feature · violin
neurosecretory_progenitors 29 XP_029204927.1 (Amil_Amillepora30407) 2.16 27.3 97.9% feature · violin
neurosecretory_progenitors 30 XP_029193070.1 (Amil_Amillepora14848) 1.79 27.3 99.3% feature · violin
neurosecretory_progenitors 31 XP_029195778.1 (Amil_Amillepora20386) 2.18 27.2 95.9% feature · violin
neurosecretory_progenitors 32 Amil_Amillepora23434 not mapped 1.99 26.9 98.6% feature · violin
neurosecretory_progenitors 33 Amil_orphan_5923 not mapped 2.14 26.8 97.9% feature · violin
neurosecretory_progenitors 34 XP_029213557.2 (Amil_Amillepora29553) 7.20 26.7 75.9% feature · violin
neurosecretory_progenitors 35 XP_029193214.1 (Amil_Amillepora02957) 1.88 26.6 99.1% feature · violin
neurosecretory_progenitors 36 XP_029206397.2 (Amil_Amillepora03878) 5.74 26.5 79.8% feature · violin
neurosecretory_progenitors 37 XP_029211127.2 (Amil_Amillepora19244) 2.45 26.4 94.0% feature · violin
neurosecretory_progenitors 38 XP_029193153.1 (Amil_Amillepora14805) 2.06 26.2 97.7% feature · violin
neurosecretory_progenitors 39 XP_029185028.1 (Amil_Amillepora00154) 2.29 26.2 97.0% feature · violin
neurosecretory_progenitors 40 Amil_orphan_9935 not mapped 2.02 26.1 97.7% feature · violin
neurosecretory_progenitors 41 XP_029196535.2 (Amil_Amillepora02598) 2.13 25.9 97.9% feature · violin
neurosecretory_progenitors 42 XP_029184358.1 (Amil_Amillepora09208) 2.05 25.8 97.2% feature · violin
neurosecretory_progenitors 43 Amil_orphan_336 not mapped 1.93 25.8 97.2% feature · violin
neurosecretory_progenitors 44 XP_029188562.2 (Amil_Amillepora03560) 2.04 25.7 97.7% feature · violin
neurosecretory_progenitors 45 XP_029190476.1 (Amil_Amillepora08567) 1.84 25.6 98.6% feature · violin
neurosecretory_progenitors 46 XP_029198474.1 (Amil_Amillepora12482) 2.03 25.5 98.2% feature · violin
neurosecretory_progenitors 47 XP_029181106.1 (Amil_Amillepora10649) 2.01 25.4 97.5% feature · violin
neurosecretory_progenitors 48 XP_029202921.1 (Amil_Amillepora09984) 2.18 25.3 94.5% feature · violin
neurosecretory_progenitors 49 XP_029202874.1 (Amil_Amillepora09390) 1.99 25.3 99.5% feature · violin
neurosecretory_progenitors 50 XP_029195228.1 (Amil_Amillepora08022) 2.03 25.2 96.6% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 8 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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