Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora04324 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
digestive_filaments 1 Amil_Amillepora09800 not mapped 11.31 7.5 66.7% feature · violin
digestive_filaments 2 Amil_Amillepora12229 not mapped 11.00 6.7 59.5% feature · violin
digestive_filaments 3 Amil_orphan_2533 not mapped 6.56 6.5 59.5% feature · violin
digestive_filaments 4 Amil_orphan_13037 not mapped 2.87 6.4 92.9% feature · violin
digestive_filaments 5 Amil_Amillepora31032 not mapped 7.67 6.3 57.1% feature · violin
digestive_filaments 6 Amil_orphan_13016 not mapped 2.88 6.3 90.5% feature · violin
digestive_filaments 7 XP_044183937.1 (Amil_Amillepora14835) 5.36 5.8 57.1% feature · violin
digestive_filaments 8 XP_029199903.2 (Amil_Amillepora14464) 9.05 5.3 47.6% feature · violin
digestive_filaments 9 XP_029197366.2 (Amil_Amillepora03336) 4.34 4.6 45.2% feature · violin
digestive_filaments 10 XP_044174399.1 (Amil_Amillepora09401) 10.53 4.5 40.5% feature · violin
digestive_filaments 11 XP_029186206.2 (Amil_Amillepora32573) 5.95 4.4 40.5% feature · violin
digestive_filaments 12 XP_044162912.1 (Amil_Amillepora15330) 0.43 4.3 100.0% feature · violin
digestive_filaments 13 XP_029194563.1 (Amil_Amillepora23336) 0.94 4.2 88.1% feature · violin
digestive_filaments 14 XP_029197326.1 (Amil_Amillepora04324) 1.71 4.0 61.9% feature · violin
digestive_filaments 15 XP_029191022.2 (Amil_Amillepora14669) 2.04 3.9 64.3% feature · violin
digestive_filaments 16 Amil_Amillepora15519 not mapped 5.88 3.6 33.3% feature · violin
digestive_filaments 17 XP_029210519.2 (Amil_Amillepora13334) 2.78 3.5 40.5% feature · violin
digestive_filaments 18 XP_029211434.2 (Amil_Amillepora13332) 8.40 3.4 31.0% feature · violin
digestive_filaments 19 XP_044164783.1 (Amil_Amillepora27720) 7.07 3.4 31.0% feature · violin
digestive_filaments 20 XP_029211344.1 (Amil_Amillepora26579) 6.02 3.4 31.0% feature · violin
digestive_filaments 21 XP_029211182.2 (Amil_Amillepora19250) 3.16 3.2 35.7% feature · violin
digestive_filaments 22 Amil_orphan_6700 not mapped 7.98 3.2 28.6% feature · violin
digestive_filaments 23 XP_029203589.2 (Amil_Amillepora29026) 7.90 3.2 28.6% feature · violin
digestive_filaments 24 XP_029180124.1 (Amil_Amillepora03290) 1.00 3.1 64.3% feature · violin
digestive_filaments 25 XP_029188245.2 (Amil_Amillepora09084) 4.04 3.1 31.0% feature · violin
digestive_filaments 26 XP_044180236.1 (Amil_Amillepora24567) 2.35 3.0 38.1% feature · violin
digestive_filaments 27 Amil_Amillepora06269 not mapped 8.10 2.9 26.2% feature · violin
digestive_filaments 28 XP_029194523.2 (Amil_Amillepora23305) 3.47 2.9 31.0% feature · violin
digestive_filaments 29 XP_044168035.1 (Amil_Amillepora34868) 6.36 2.9 26.2% feature · violin
digestive_filaments 30 XP_029211194.1 (Amil_Amillepora19233) 1.63 2.8 47.6% feature · violin
digestive_filaments 31 Amil_orphan_9461 not mapped 0.25 2.8 90.5% feature · violin
digestive_filaments 32 XP_029212510.1 (Amil_Amillepora21932) 0.53 2.8 85.7% feature · violin
digestive_filaments 33 Amil_orphan_3124 not mapped 4.69 2.8 26.2% feature · violin
digestive_filaments 34 Amil_orphan_9457 not mapped 0.38 2.7 95.2% feature · violin
digestive_filaments 35 XP_044179877.1 (Amil_Amillepora12726) 4.29 2.7 26.2% feature · violin
digestive_filaments 36 XP_029193320.2 (Amil_Amillepora14257) 5.68 2.6 23.8% feature · violin
digestive_filaments 37 XP_029199127.1 (Amil_Amillepora10715) 3.19 2.6 28.6% feature · violin
digestive_filaments 38 XP_029204912.2 (Amil_Amillepora30419) 0.98 2.5 54.8% feature · violin
digestive_filaments 39 XP_029204021.1 (Amil_Amillepora26537) 0.87 2.4 52.4% feature · violin
digestive_filaments 40 XP_029211620.2 (Amil_Amillepora26953) 3.18 2.4 26.2% feature · violin
digestive_filaments 41 XP_029208566.2 (Amil_Amillepora12326) 9.97 2.4 21.4% feature · violin
digestive_filaments 42 XP_029187588.2 (Amil_Amillepora19737) 9.31 2.4 21.4% feature · violin
digestive_filaments 43 Amil_Amillepora20995 not mapped 1.27 2.3 54.8% feature · violin
digestive_filaments 44 XP_029213122.1 (Amil_Amillepora07089) 0.49 2.3 88.1% feature · violin
digestive_filaments 45 XP_029198679.2 (Amil_Amillepora09623) 2.67 2.3 26.2% feature · violin
digestive_filaments 46 XP_044176412.1 (Amil_Amillepora00666) 2.64 2.3 28.6% feature · violin
digestive_filaments 47 XP_029204315.2 (Amil_Amillepora02912) 5.07 2.3 21.4% feature · violin
digestive_filaments 48 Amil_orphan_6896 not mapped 0.48 2.3 85.7% feature · violin
digestive_filaments 49 XP_029206570.2 (Amil_Amillepora20540) 1.66 2.2 35.7% feature · violin
digestive_filaments 50 Amil_Amillepora20872 not mapped 2.54 2.2 26.2% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 15 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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