Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora05074 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
neuron_Isl_1 1 XP_029206397.2 (Amil_Amillepora03878) 6.47 38.8 78.2% feature · violin
neuron_Isl_1 2 Amil_orphan_6935 not mapped 5.59 30.5 65.0% feature · violin
neuron_Isl_1 3 XP_029185273.1 (Amil_Amillepora18259) 5.80 28.4 57.3% feature · violin
neuron_Isl_1 4 XP_029200397.1 (Amil_Amillepora04670) 4.76 27.2 57.5% feature · violin
neuron_Isl_1 5 XP_029191356.2 (Amil_Amillepora06710) 5.68 26.2 52.7% feature · violin
neuron_Isl_1 6 XP_029185107.2 (Amil_Amillepora10252) 5.43 25.8 52.1% feature · violin
neuron_Isl_1 7 XP_029206656.2 (Amil_Amillepora07009) 3.32 24.3 57.4% feature · violin
neuron_Isl_1 8 Amil_Amillepora14296 not mapped 5.10 21.8 44.4% feature · violin
neuron_Isl_1 9 XP_029192193.2 (Amil_Amillepora13179) 4.91 20.1 41.0% feature · violin
neuron_Isl_1 10 Amil_orphan_8270 not mapped 2.40 19.9 55.6% feature · violin
neuron_Isl_1 11 XP_029194022.2 (Amil_Amillepora19007) 2.50 19.4 52.4% feature · violin
neuron_Isl_1 12 XP_029200533.2 (Amil_Amillepora08605) 3.72 18.9 42.1% feature · violin
neuron_Isl_1 13 Amil_orphan_7055 not mapped 3.99 18.8 40.7% feature · violin
neuron_Isl_1 14 XP_029180381.2 (Amil_Amillepora32633) 2.89 18.3 45.6% feature · violin
neuron_Isl_1 15 Amil_Amillepora03877 not mapped 5.12 18.0 36.6% feature · violin
neuron_Isl_1 16 XP_029203670.1 (Amil_Amillepora03934) 4.31 17.8 37.3% feature · violin
neuron_Isl_1 17 XP_029194071.1 (Amil_Amillepora19006) 4.93 17.1 34.7% feature · violin
neuron_Isl_1 18 XP_044173931.1 (Amil_Amillepora22670) 2.68 15.0 37.7% feature · violin
neuron_Isl_1 19 XP_029208331.2 (Amil_Amillepora07597) 2.38 14.8 40.5% feature · violin
neuron_Isl_1 20 XP_029185740.2 (Amil_Amillepora17016) 5.18 14.4 29.0% feature · violin
neuron_Isl_1 21 Amil_Amillepora09020 not mapped 5.93 14.1 27.9% feature · violin
neuron_Isl_1 22 XP_029194051.2 (Amil_Amillepora19005) 4.38 13.8 28.6% feature · violin
neuron_Isl_1 23 XP_029213011.1 (Amil_Amillepora14040) 4.16 13.8 28.9% feature · violin
neuron_Isl_1 24 XP_029203777.2 (Amil_Amillepora05074) 4.26 13.7 28.7% feature · violin
neuron_Isl_1 25 Amil_Amillepora13049 not mapped 6.46 13.5 27.1% feature · violin
neuron_Isl_1 26 XP_029187030.2 (Amil_Amillepora20093) 2.96 13.4 32.4% feature · violin
neuron_Isl_1 27 XP_029213336.1 (Amil_Amillepora16116) 3.82 13.4 29.1% feature · violin
neuron_Isl_1 28 XP_029184800.1 (Amil_Amillepora00038) 3.76 13.2 28.5% feature · violin
neuron_Isl_1 29 XP_029205701.1 (Amil_Amillepora16396) 3.29 13.0 29.6% feature · violin
neuron_Isl_1 30 XP_029196869.1 (Amil_Amillepora10740) 3.56 13.0 29.0% feature · violin
neuron_Isl_1 31 XP_029213859.1 (Amil_Amillepora11597) 8.49 12.7 24.6% feature · violin
neuron_Isl_1 32 XP_029193552.1 (Amil_Amillepora22022) 5.33 12.4 27.0% feature · violin
neuron_Isl_1 33 XP_029204784.2 (Amil_Amillepora24434) 3.51 12.0 26.3% feature · violin
neuron_Isl_1 34 XP_029212101.2 (Amil_Amillepora05797) 3.93 12.0 25.5% feature · violin
neuron_Isl_1 35 XP_044179648.1 (Amil_Amillepora01235) 2.32 11.9 32.4% feature · violin
neuron_Isl_1 36 XP_044169524.1 (Amil_Amillepora03552) 4.70 11.6 23.6% feature · violin
neuron_Isl_1 37 XP_029211173.2 (Amil_Amillepora19227) 3.24 11.4 26.0% feature · violin
neuron_Isl_1 38 XP_044178703.1 (Amil_Amillepora12442) 1.61 10.3 36.5% feature · violin
neuron_Isl_1 39 Amil_orphan_3178 not mapped 4.33 10.0 20.6% feature · violin
neuron_Isl_1 40 XP_029195395.1 (Amil_Amillepora07361) 3.40 9.9 22.1% feature · violin
neuron_Isl_1 41 XP_029197809.2 (Amil_Amillepora15426) 3.41 9.9 21.9% feature · violin
neuron_Isl_1 42 Amil_Amillepora08579 not mapped 6.76 9.9 19.3% feature · violin
neuron_Isl_1 43 XP_044180872.1 (Amil_Amillepora27267) 5.11 9.7 19.9% feature · violin
neuron_Isl_1 44 Amil_Amillepora15768 not mapped 4.34 9.5 19.7% feature · violin
neuron_Isl_1 45 Amil_Amillepora26981 not mapped 3.71 9.4 27.7% feature · violin
neuron_Isl_1 46 XP_029192673.2 (Amil_Amillepora01095) 4.31 9.2 18.9% feature · violin
neuron_Isl_1 47 Amil_Amillepora08691 not mapped 3.96 9.0 18.9% feature · violin
neuron_Isl_1 48 XP_044184529.1 (Amil_Amillepora02561) 2.31 9.0 24.4% feature · violin
neuron_Isl_1 49 XP_029200123.2 (Amil_Amillepora26110) 1.77 9.0 29.2% feature · violin
neuron_Isl_1 50 XP_044173604.1 (Amil_Amillepora21986) 2.48 9.0 23.0% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 12 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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