Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora05942 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
gastrodermis_2 1 XP_029188703.2 (Amil_Amillepora23165) 4.44 79.7 99.5% feature · violin
gastrodermis_2 2 XP_044164160.1 (Amil_Amillepora25073) 3.76 72.3 99.4% feature · violin
gastrodermis_2 3 XP_029197443.2 (Amil_Amillepora15207) 3.91 68.4 97.8% feature · violin
gastrodermis_2 4 Amil_Amillepora01102 not mapped 4.69 67.0 86.5% feature · violin
gastrodermis_2 5 XP_029197908.2 (Amil_Amillepora00970) 3.87 65.7 89.6% feature · violin
gastrodermis_2 6 XP_044175386.1 (Amil_Amillepora09610) 3.55 63.9 94.4% feature · violin
gastrodermis_2 7 XP_029195765.2 (Amil_Amillepora20379) 2.87 61.8 94.5% feature · violin
gastrodermis_2 8 Amil_Amillepora10945 not mapped 3.23 57.4 96.7% feature · violin
gastrodermis_2 9 XP_029192590.2 (Amil_Amillepora01105) 3.51 57.3 94.1% feature · violin
gastrodermis_2 10 XP_029187284.2 (Amil_Amillepora19454) 4.33 57.1 70.9% feature · violin
gastrodermis_2 11 XP_029199411.2 (Amil_Amillepora10039) 4.23 56.4 69.5% feature · violin
gastrodermis_2 12 Amil_Amillepora12321 not mapped 3.17 55.1 97.4% feature · violin
gastrodermis_2 13 XP_029193134.1 (Amil_Amillepora14820) 3.09 55.0 99.7% feature · violin
gastrodermis_2 14 XP_029188773.2 (Amil_Amillepora24449) 3.26 54.2 80.8% feature · violin
gastrodermis_2 15 XP_029194846.1 (Amil_Amillepora02634) 3.03 54.1 82.9% feature · violin
gastrodermis_2 16 Amil_Amillepora21884 not mapped 3.16 53.0 98.0% feature · violin
gastrodermis_2 17 XP_044180799.1 (Amil_Amillepora24332) 3.63 52.5 69.3% feature · violin
gastrodermis_2 18 XP_029188916.1 (Amil_Amillepora24448) 4.10 52.3 67.3% feature · violin
gastrodermis_2 19 XP_044169037.1 (Amil_Amillepora05942) 4.22 52.2 64.3% feature · violin
gastrodermis_2 20 XP_029184059.2 (Amil_Amillepora23548) 2.60 51.4 87.9% feature · violin
gastrodermis_2 21 XP_029189090.2 (Amil_Amillepora05941) 3.93 50.3 63.1% feature · violin
gastrodermis_2 22 XP_029198479.2 (Amil_Amillepora00758) 3.17 50.1 72.2% feature · violin
gastrodermis_2 23 Amil_orphan_8558 not mapped 2.92 49.9 78.2% feature · violin
gastrodermis_2 24 Amil_orphan_197 not mapped 3.50 48.6 64.4% feature · violin
gastrodermis_2 25 XP_044170280.1 (Amil_Amillepora03653) 2.82 48.6 87.5% feature · violin
gastrodermis_2 26 XP_044184219.1 (Amil_Amillepora14445) 2.75 46.7 89.7% feature · violin
gastrodermis_2 27 XP_029187421.2 (Amil_Amillepora15499) 4.35 46.7 55.9% feature · violin
gastrodermis_2 28 XP_029204385.2 (Amil_Amillepora25225) 3.38 46.4 61.4% feature · violin
gastrodermis_2 29 XP_044178200.1 (Amil_Amillepora18692) 2.74 46.4 75.0% feature · violin
gastrodermis_2 30 XP_029181425.2 (Amil_Amillepora06594) 2.67 45.2 74.9% feature · violin
gastrodermis_2 31 XP_029192942.2 (Amil_Amillepora16899) 3.60 45.1 57.5% feature · violin
gastrodermis_2 32 XP_044181368.1 (Amil_Amillepora20669) 2.51 43.6 72.2% feature · violin
gastrodermis_2 33 XP_029205062.2 (Amil_Amillepora22873) 4.79 43.0 50.1% feature · violin
gastrodermis_2 34 XP_029193760.2 (Amil_Amillepora11367) 2.41 41.5 74.9% feature · violin
gastrodermis_2 35 XP_029204420.1 (Amil_Amillepora02524) 2.70 41.3 62.6% feature · violin
gastrodermis_2 36 XP_029187816.2 (Amil_Amillepora10917) 2.53 40.0 85.4% feature · violin
gastrodermis_2 37 Amil_Amillepora19974 not mapped 1.54 39.7 84.0% feature · violin
gastrodermis_2 38 XP_029179311.2 (Amil_Amillepora01363) 3.70 39.7 49.6% feature · violin
gastrodermis_2 39 XP_029206219.2 (Amil_Amillepora20678) 2.13 38.3 71.5% feature · violin
gastrodermis_2 40 XP_029193502.2 (Amil_Amillepora20147) 2.43 37.8 62.4% feature · violin
gastrodermis_2 41 XP_029183233.2 (Amil_Amillepora32200) 1.53 37.1 89.5% feature · violin
gastrodermis_2 42 XP_044180776.1 (Amil_Amillepora24331) 3.06 36.9 50.0% feature · violin
gastrodermis_2 43 XP_044178975.1 (Amil_Amillepora10946) 2.12 36.8 83.9% feature · violin
gastrodermis_2 44 XP_029209889.2 (Amil_Amillepora16913) 3.54 36.6 45.8% feature · violin
gastrodermis_2 45 XP_029191295.2 (Amil_Amillepora15473) 2.88 36.4 50.7% feature · violin
gastrodermis_2 46 XP_029206650.2 (Amil_Amillepora07006) 2.46 36.0 55.7% feature · violin
gastrodermis_2 47 XP_029211609.1 (Amil_Amillepora26947) 4.33 36.0 42.4% feature · violin
gastrodermis_2 48 Amil_orphan_5431 not mapped 2.16 35.8 90.7% feature · violin
gastrodermis_2 49 Amil_Amillepora12323 not mapped 2.31 35.6 58.5% feature · violin
gastrodermis_2 50 Amil_Amillepora13531 not mapped 1.84 34.6 70.0% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 10 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

TOP