Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora07597 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
neuron_Pou4 1 XP_029208331.2 (Amil_Amillepora07597) 5.72 35.5 84.5% feature · violin
neuron_Pou4 2 XP_029195310.1 (Amil_Amillepora22064) 3.91 34.8 86.4% feature · violin
neuron_Pou4 3 XP_044162912.1 (Amil_Amillepora15330) 1.21 33.8 100.0% feature · violin
neuron_Pou4 4 XP_029200533.2 (Amil_Amillepora08605) 6.42 31.7 74.9% feature · violin
neuron_Pou4 5 XP_029200397.1 (Amil_Amillepora04670) 6.00 30.4 72.2% feature · violin
neuron_Pou4 6 Amil_orphan_2843 not mapped 9.47 29.1 66.1% feature · violin
neuron_Pou4 7 XP_029206497.2 (Amil_Amillepora27359) 3.85 27.0 70.3% feature · violin
neuron_Pou4 8 XP_044165342.1 (Amil_Amillepora03176) 9.58 25.8 58.4% feature · violin
neuron_Pou4 9 XP_029213561.2 (Amil_Amillepora36556) 3.30 25.3 70.4% feature · violin
neuron_Pou4 10 XP_029201639.2 (Amil_Amillepora16948) 7.73 24.6 56.2% feature · violin
neuron_Pou4 11 Amil_Amillepora27402 not mapped 5.48 23.2 55.0% feature · violin
neuron_Pou4 12 XP_029202330.1 (Amil_Amillepora03014) 3.88 22.9 59.3% feature · violin
neuron_Pou4 13 XP_044163779.1 (Amil_Amillepora26196) 5.80 22.8 53.7% feature · violin
neuron_Pou4 14 XP_044183983.1 (Amil_Amillepora14512) 6.91 22.7 52.3% feature · violin
neuron_Pou4 15 XP_029184757.2 (Amil_Amillepora00052) 7.50 22.1 50.5% feature · violin
neuron_Pou4 16 XP_044172315.1 (Amil_Amillepora04837) 6.44 22.0 51.1% feature · violin
neuron_Pou4 17 XP_029193422.2 (Amil_Amillepora16355) 9.45 21.7 49.2% feature · violin
neuron_Pou4 18 XP_044183374.1 (Amil_Amillepora27482) 5.99 21.7 50.5% feature · violin
neuron_Pou4 19 XP_029186357.2 (Amil_Amillepora03174) 8.73 21.2 48.3% feature · violin
neuron_Pou4 20 XP_029199693.2 (Amil_Amillepora02034) 5.50 21.1 50.1% feature · violin
neuron_Pou4 21 XP_044176931.1 (Amil_Amillepora07302) 6.38 21.0 48.6% feature · violin
neuron_Pou4 22 XP_044178318.1 (Amil_Amillepora01045) 7.99 20.3 46.3% feature · violin
neuron_Pou4 23 Amil_orphan_8270 not mapped 3.02 20.3 58.4% feature · violin
neuron_Pou4 24 XP_029196870.2 (Amil_Amillepora10741) 8.69 20.2 45.9% feature · violin
neuron_Pou4 25 XP_029190985.1 (Amil_Amillepora14676) 1.94 20.1 75.3% feature · violin
neuron_Pou4 26 Amil_orphan_242 not mapped 9.49 20.0 45.4% feature · violin
neuron_Pou4 27 XP_029180555.2 (Amil_Amillepora09533) 6.28 18.1 42.0% feature · violin
neuron_Pou4 28 XP_044164314.1 (Amil_Amillepora24860) 5.28 18.1 43.0% feature · violin
neuron_Pou4 29 Amil_Amillepora13374 not mapped 5.89 17.9 41.9% feature · violin
neuron_Pou4 30 XP_029205908.1 (Amil_Amillepora32267) 1.06 17.8 87.1% feature · violin
neuron_Pou4 31 XP_029188848.1 (Amil_Amillepora26056) 1.84 17.3 61.3% feature · violin
neuron_Pou4 32 Amil_orphan_3124 not mapped 7.32 16.8 38.6% feature · violin
neuron_Pou4 33 Amil_orphan_8074 not mapped 6.57 16.6 38.4% feature · violin
neuron_Pou4 34 XP_044183565.1 (Amil_Amillepora26283) 5.35 16.4 38.7% feature · violin
neuron_Pou4 35 Amil_orphan_8226 not mapped 4.87 16.0 38.6% feature · violin
neuron_Pou4 36 XP_029204784.2 (Amil_Amillepora24434) 4.80 15.9 38.4% feature · violin
neuron_Pou4 37 XP_029184819.1 (Amil_Amillepora00086) 4.83 15.6 37.5% feature · violin
neuron_Pou4 38 Amil_orphan_7055 not mapped 4.04 15.4 39.0% feature · violin
neuron_Pou4 39 Amil_Amillepora07326 not mapped 2.75 15.3 45.7% feature · violin
neuron_Pou4 40 Amil_orphan_6963 not mapped 5.82 15.1 35.1% feature · violin
neuron_Pou4 41 XP_044175678.1 (Amil_Amillepora08704) 1.37 14.9 61.4% feature · violin
neuron_Pou4 42 XP_029182669.2 (Amil_Amillepora26299) 7.11 14.8 33.9% feature · violin
neuron_Pou4 43 XP_029193465.2 (Amil_Amillepora16348) 6.98 14.8 33.9% feature · violin
neuron_Pou4 44 XP_029202160.2 (Amil_Amillepora13031) 3.94 14.7 37.5% feature · violin
neuron_Pou4 45 Amil_orphan_588 not mapped 10.26 14.6 33.0% feature · violin
neuron_Pou4 46 XP_044172693.1 (Amil_Amillepora03205) 8.46 14.5 32.9% feature · violin
neuron_Pou4 47 XP_029213011.1 (Amil_Amillepora14040) 5.00 14.4 34.5% feature · violin
neuron_Pou4 48 XP_044183784.1 (Amil_Amillepora26509) 8.56 14.1 32.0% feature · violin
neuron_Pou4 49 XP_044183983.1 (Amil_Amillepora14513) 6.49 13.6 31.4% feature · violin
neuron_Pou4 50 XP_044170476.1 (Amil_Amillepora29540) 2.74 13.6 41.3% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 12 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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