Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora07640 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
gland_5 1 XP_029193873.2 (Amil_Amillepora04871) 11.68 12.6 100.0% feature · violin
gland_5 2 Amil_Amillepora06816 not mapped 12.55 12.6 100.0% feature · violin
gland_5 3 XP_029197594.2 (Amil_Amillepora07642) 14.32 12.4 98.1% feature · violin
gland_5 4 XP_029204518.2 (Amil_Amillepora08649) 14.53 12.1 96.2% feature · violin
gland_5 5 XP_029186758.2 (Amil_Amillepora24270) 12.93 12.1 96.2% feature · violin
gland_5 6 XP_044180789.1 (Amil_Amillepora24403) 11.06 11.9 94.3% feature · violin
gland_5 7 XP_029213153.2 (Amil_Amillepora22423) 9.78 11.4 92.5% feature · violin
gland_5 8 XP_044182280.1 (Amil_Amillepora18267) 8.44 11.1 90.6% feature · violin
gland_5 9 XP_044163566.1 (Amil_Amillepora15381) 9.35 10.4 83.0% feature · violin
gland_5 10 Amil_orphan_7317 not mapped 12.61 10.0 79.2% feature · violin
gland_5 11 Amil_Amillepora26177 not mapped 10.23 9.9 79.2% feature · violin
gland_5 12 Amil_Amillepora22422 not mapped 11.55 9.5 75.5% feature · violin
gland_5 13 XP_044177147.1 (Amil_Amillepora07641) 13.70 9.0 71.7% feature · violin
gland_5 14 Amil_Amillepora22409 not mapped 8.97 8.5 67.9% feature · violin
gland_5 15 Amil_orphan_1483 not mapped 6.09 8.2 67.9% feature · violin
gland_5 16 XP_044182281.1 (Amil_Amillepora18269) 5.11 7.1 60.4% feature · violin
gland_5 17 Amil_orphan_2533 not mapped 6.20 7.1 58.5% feature · violin
gland_5 18 XP_029208331.2 (Amil_Amillepora07597) 3.41 6.7 66.0% feature · violin
gland_5 19 Amil_orphan_11268 not mapped 7.57 6.5 52.8% feature · violin
gland_5 20 XP_029197903.1 (Amil_Amillepora01018) 13.97 6.4 50.9% feature · violin
gland_5 21 Amil_Amillepora29623 not mapped 11.78 6.4 50.9% feature · violin
gland_5 22 XP_044182148.1 (Amil_Amillepora18144) 10.23 6.4 50.9% feature · violin
gland_5 23 Amil_Amillepora18143 not mapped 9.93 6.4 50.9% feature · violin
gland_5 24 XP_044173800.1 (Amil_Amillepora22421) 5.65 6.2 52.8% feature · violin
gland_5 25 XP_029189800.2 (Amil_Amillepora33772) 12.01 5.9 47.2% feature · violin
gland_5 26 XP_044178473.1 (Amil_Amillepora19776) 10.43 5.7 45.3% feature · violin
gland_5 27 Amil_Amillepora13071 not mapped 12.65 5.5 43.4% feature · violin
gland_5 28 XP_044175702.1 (Amil_Amillepora08763) 10.36 5.5 43.4% feature · violin
gland_5 29 XP_044182015.1 (Amil_Amillepora03277) 8.05 5.4 43.4% feature · violin
gland_5 30 XP_044172315.1 (Amil_Amillepora04837) 4.64 5.3 45.3% feature · violin
gland_5 31 XP_029211103.2 (Amil_Amillepora19592) 3.62 5.2 50.9% feature · violin
gland_5 32 Amil_Amillepora24267 not mapped 7.37 5.2 41.5% feature · violin
gland_5 33 XP_044185196.1 (Amil_Amillepora16644) 7.04 5.1 41.5% feature · violin
gland_5 34 XP_044183983.1 (Amil_Amillepora14512) 4.71 5.1 43.4% feature · violin
gland_5 35 Amil_Amillepora37574 not mapped 12.60 5.0 39.6% feature · violin
gland_5 36 XP_044169055.1 (Amil_Amillepora31840) 9.55 5.0 39.6% feature · violin
gland_5 37 XP_029183928.2 (Amil_Amillepora11209) 3.78 4.9 50.9% feature · violin
gland_5 38 XP_029208249.2 (Amil_Amillepora07640) 8.53 4.7 37.7% feature · violin
gland_5 39 XP_029191356.2 (Amil_Amillepora06710) 3.76 4.6 41.5% feature · violin
gland_5 40 XP_029213680.2 (Amil_Amillepora03621) 4.74 4.4 37.7% feature · violin
gland_5 41 XP_029205678.2 (Amil_Amillepora03656) 2.79 4.4 45.3% feature · violin
gland_5 42 XP_029211865.2 (Amil_Amillepora09960) 4.25 4.4 37.7% feature · violin
gland_5 43 XP_044166011.1 (Amil_Amillepora29625) 11.21 4.3 34.0% feature · violin
gland_5 44 XP_044169540.1 (Amil_Amillepora33762) 8.89 4.3 34.0% feature · violin
gland_5 45 Amil_orphan_2381 not mapped 7.09 4.2 34.0% feature · violin
gland_5 46 Amil_Amillepora08959 not mapped 4.37 4.0 34.0% feature · violin
gland_5 47 XP_044167663.1 (Amil_Amillepora03278) 6.21 4.0 32.1% feature · violin
gland_5 48 XP_029188536.1 (Amil_Amillepora24627) 4.52 3.8 32.1% feature · violin
gland_5 49 Amil_Amillepora14296 not mapped 3.54 3.7 34.0% feature · violin
gland_5 50 XP_029185359.2 (Amil_Amillepora18136) 5.10 3.6 30.2% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why). Those IDs are the keys the underlying data files use, so they are what the links here carry. 16 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models and no accession could be justified for them. They are left as they are rather than given a best guess.

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