Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora08260 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
gastrodermis_like 1 Amil_Amillepora20995 not mapped 4.77 47.1 87.7% feature · violin
gastrodermis_like 2 XP_029193760.2 (Amil_Amillepora11367) 3.70 45.6 87.8% feature · violin
gastrodermis_like 3 Amil_orphan_7961 not mapped 2.90 40.7 90.1% feature · violin
gastrodermis_like 4 XP_044173337.1 (Amil_Amillepora05965) 2.70 38.7 90.7% feature · violin
gastrodermis_like 5 XP_029193134.1 (Amil_Amillepora14820) 2.86 38.2 98.9% feature · violin
gastrodermis_like 6 XP_044177813.1 (Amil_Amillepora20066) 3.10 37.6 77.8% feature · violin
gastrodermis_like 7 XP_044175116.1 (Amil_Amillepora10630) 2.83 34.4 75.8% feature · violin
gastrodermis_like 8 XP_044164581.1 (Amil_Amillepora26052) 3.20 34.0 79.2% feature · violin
gastrodermis_like 9 XP_029191053.2 (Amil_Amillepora08789) 2.59 33.2 73.3% feature · violin
gastrodermis_like 10 XP_029189101.2 (Amil_Amillepora05916) 3.26 30.9 58.8% feature · violin
gastrodermis_like 11 XP_029197502.2 (Amil_Amillepora15217) 2.20 30.6 77.4% feature · violin
gastrodermis_like 12 XP_044179250.1 (Amil_Amillepora12607) 2.33 30.3 85.1% feature · violin
gastrodermis_like 13 XP_029196062.2 (Amil_Amillepora12905) 2.95 29.0 62.7% feature · violin
gastrodermis_like 14 XP_044170410.1 (Amil_Amillepora36407) 2.84 28.8 58.0% feature · violin
gastrodermis_like 15 XP_029188703.2 (Amil_Amillepora23165) 2.54 28.7 97.1% feature · violin
gastrodermis_like 16 XP_044177626.1 (Amil_Amillepora08383) 3.06 28.1 60.8% feature · violin
gastrodermis_like 17 XP_029198479.2 (Amil_Amillepora00758) 2.42 27.7 64.7% feature · violin
gastrodermis_like 18 XP_029197443.2 (Amil_Amillepora15207) 2.31 27.2 92.5% feature · violin
gastrodermis_like 19 XP_044164160.1 (Amil_Amillepora25073) 2.16 26.9 91.4% feature · violin
gastrodermis_like 20 XP_029192150.2 (Amil_Amillepora13187) 2.50 26.7 59.3% feature · violin
gastrodermis_like 21 XP_029207943.2 (Amil_Amillepora12222) 4.26 26.4 45.3% feature · violin
gastrodermis_like 22 XP_029203614.2 (Amil_Amillepora09933) 2.69 25.8 52.9% feature · violin
gastrodermis_like 23 XP_029205889.2 (Amil_Amillepora21658) 2.72 25.5 51.7% feature · violin
gastrodermis_like 24 XP_044163150.1 (Amil_Amillepora16208) 3.61 25.4 46.6% feature · violin
gastrodermis_like 25 XP_044175182.1 (Amil_Amillepora10760) 2.09 25.1 67.2% feature · violin
gastrodermis_like 26 XP_029192590.2 (Amil_Amillepora01105) 2.17 25.0 80.2% feature · violin
gastrodermis_like 27 Amil_Amillepora07717 not mapped 1.27 25.0 95.1% feature · violin
gastrodermis_like 28 XP_044182322.1 (Amil_Amillepora17937) 2.02 24.6 63.1% feature · violin
gastrodermis_like 29 XP_044164810.1 (Amil_Amillepora27634) 3.11 24.2 46.1% feature · violin
gastrodermis_like 30 XP_029184304.2 (Amil_Amillepora25747) 3.08 24.0 45.9% feature · violin
gastrodermis_like 31 XP_029184791.2 (Amil_Amillepora26237) 2.52 23.6 49.5% feature · violin
gastrodermis_like 32 Amil_orphan_5431 not mapped 2.02 23.3 91.4% feature · violin
gastrodermis_like 33 XP_029192894.2 (Amil_Amillepora16851) 3.38 23.1 41.5% feature · violin
gastrodermis_like 34 Amil_orphan_570 not mapped 2.09 22.9 55.2% feature · violin
gastrodermis_like 35 XP_029186222.2 (Amil_Amillepora24391) 0.95 22.7 93.0% feature · violin
gastrodermis_like 36 XP_044185260.1 (Amil_Amillepora16546) 1.38 22.4 83.0% feature · violin
gastrodermis_like 37 XP_044163132.1 (Amil_Amillepora15327) 2.32 22.3 48.6% feature · violin
gastrodermis_like 38 XP_029211985.2 (Amil_Amillepora03666) 1.66 21.8 63.5% feature · violin
gastrodermis_like 39 XP_044180109.1 (Amil_Amillepora24807) 1.83 21.7 60.3% feature · violin
gastrodermis_like 40 XP_029188103.2 (Amil_Amillepora09010) 2.90 21.7 41.6% feature · violin
gastrodermis_like 41 XP_044178825.1 (Amil_Amillepora10970) 1.85 21.6 58.0% feature · violin
gastrodermis_like 42 XP_029201700.2 (Amil_Amillepora08260) 1.93 21.6 56.7% feature · violin
gastrodermis_like 43 XP_029185077.2 (Amil_Amillepora24650) 1.40 21.5 71.2% feature · violin
gastrodermis_like 44 XP_029213520.2 (Amil_Amillepora29555) 2.05 21.4 51.2% feature · violin
gastrodermis_like 45 XP_029197128.1 (Amil_Amillepora15229) 1.61 21.4 63.5% feature · violin
gastrodermis_like 46 XP_044184434.1 (Amil_Amillepora14715) 2.34 21.3 46.1% feature · violin
gastrodermis_like 47 XP_029193095.2 (Amil_Amillepora14797) 2.20 21.1 47.3% feature · violin
gastrodermis_like 48 XP_029206570.2 (Amil_Amillepora20540) 2.18 21.0 49.1% feature · violin
gastrodermis_like 49 XP_044177029.1 (Amil_Amillepora07476) 2.39 20.9 44.5% feature · violin
gastrodermis_like 50 Amil_orphan_7454 not mapped 1.86 20.8 54.0% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 6 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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