Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora08928 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
gastrodermis_mitotic 1 XP_029205888.1 (Amil_Amillepora21657) 3.71 30.3 94.3% feature · violin
gastrodermis_mitotic 2 XP_029206377.2 (Amil_Amillepora03881) 6.48 29.1 79.7% feature · violin
gastrodermis_mitotic 3 XP_029195799.2 (Amil_Amillepora25278) 5.70 29.0 82.1% feature · violin
gastrodermis_mitotic 4 XP_029184364.1 (Amil_Amillepora09117) 2.99 27.8 95.1% feature · violin
gastrodermis_mitotic 5 XP_044175887.1 (Amil_Amillepora09108) 6.38 27.5 76.8% feature · violin
gastrodermis_mitotic 6 XP_029180124.1 (Amil_Amillepora03290) 2.54 24.7 95.7% feature · violin
gastrodermis_mitotic 7 Amil_orphan_1146 not mapped 5.64 24.5 68.8% feature · violin
gastrodermis_mitotic 8 XP_044174240.1 (Amil_Amillepora22578) 5.41 23.4 64.9% feature · violin
gastrodermis_mitotic 9 XP_029194585.2 (Amil_Amillepora23315) 5.16 22.6 63.7% feature · violin
gastrodermis_mitotic 10 Amil_Amillepora21884 not mapped 2.98 21.5 97.9% feature · violin
gastrodermis_mitotic 11 Amil_Amillepora10945 not mapped 2.84 21.5 96.3% feature · violin
gastrodermis_mitotic 12 XP_029194331.1 (Amil_Amillepora25014) 2.64 21.4 79.9% feature · violin
gastrodermis_mitotic 13 XP_029199174.2 (Amil_Amillepora23097) 3.37 21.1 70.0% feature · violin
gastrodermis_mitotic 14 Amil_Amillepora12321 not mapped 2.83 20.8 96.3% feature · violin
gastrodermis_mitotic 15 XP_029197443.2 (Amil_Amillepora15207) 2.86 20.3 96.7% feature · violin
gastrodermis_mitotic 16 XP_044164160.1 (Amil_Amillepora25073) 2.65 20.3 95.9% feature · violin
gastrodermis_mitotic 17 XP_029188346.1 (Amil_Amillepora07790) 5.96 20.2 55.0% feature · violin
gastrodermis_mitotic 18 XP_029180982.1 (Amil_Amillepora10647) 4.72 19.6 55.9% feature · violin
gastrodermis_mitotic 19 XP_029183233.2 (Amil_Amillepora32200) 1.74 18.9 91.2% feature · violin
gastrodermis_mitotic 20 XP_029188703.2 (Amil_Amillepora23165) 2.74 18.8 97.3% feature · violin
gastrodermis_mitotic 21 XP_044178200.1 (Amil_Amillepora18692) 2.54 18.2 74.9% feature · violin
gastrodermis_mitotic 22 XP_044169110.1 (Amil_Amillepora32093) 5.31 18.2 50.3% feature · violin
gastrodermis_mitotic 23 XP_029194150.2 (Amil_Amillepora03037) 4.16 18.2 54.4% feature · violin
gastrodermis_mitotic 24 XP_044178975.1 (Amil_Amillepora10946) 2.40 17.9 89.3% feature · violin
gastrodermis_mitotic 25 XP_029194846.1 (Amil_Amillepora02634) 2.34 17.7 81.3% feature · violin
gastrodermis_mitotic 26 Amil_orphan_8558 not mapped 2.38 17.3 79.3% feature · violin
gastrodermis_mitotic 27 XP_029212897.2 (Amil_Amillepora04338) 5.02 16.8 46.8% feature · violin
gastrodermis_mitotic 28 XP_029191463.2 (Amil_Amillepora22078) 5.46 16.7 46.0% feature · violin
gastrodermis_mitotic 29 XP_029197908.2 (Amil_Amillepora00970) 2.31 16.5 75.8% feature · violin
gastrodermis_mitotic 30 XP_029195839.2 (Amil_Amillepora25275) 2.63 16.2 59.3% feature · violin
gastrodermis_mitotic 31 XP_029200625.2 (Amil_Amillepora04422) 4.89 16.2 45.4% feature · violin
gastrodermis_mitotic 32 XP_044177016.1 (Amil_Amillepora00765) 2.17 16.2 75.2% feature · violin
gastrodermis_mitotic 33 XP_044184219.1 (Amil_Amillepora14445) 2.28 16.1 89.9% feature · violin
gastrodermis_mitotic 34 XP_044170280.1 (Amil_Amillepora03653) 2.24 16.0 86.0% feature · violin
gastrodermis_mitotic 35 XP_029194173.2 (Amil_Amillepora03047) 4.81 15.9 44.6% feature · violin
gastrodermis_mitotic 36 XP_029186520.1 (Amil_Amillepora10796) 3.48 15.9 48.9% feature · violin
gastrodermis_mitotic 37 XP_029212881.1 (Amil_Amillepora04721) 4.72 15.8 44.8% feature · violin
gastrodermis_mitotic 38 XP_029187816.2 (Amil_Amillepora10917) 2.38 15.7 88.3% feature · violin
gastrodermis_mitotic 39 Amil_orphan_557 not mapped 3.53 15.7 48.3% feature · violin
gastrodermis_mitotic 40 Amil_orphan_5431 not mapped 2.20 14.9 94.0% feature · violin
gastrodermis_mitotic 41 XP_029193884.2 (Amil_Amillepora04882) 5.81 14.7 39.8% feature · violin
gastrodermis_mitotic 42 XP_044173253.1 (Amil_Amillepora05769) 5.03 14.6 40.7% feature · violin
gastrodermis_mitotic 43 XP_044178041.1 (Amil_Amillepora19984) 3.67 14.5 43.9% feature · violin
gastrodermis_mitotic 44 XP_044174971.1 (Amil_Amillepora10388) 4.09 14.2 41.3% feature · violin
gastrodermis_mitotic 45 XP_044175182.1 (Amil_Amillepora10760) 1.94 13.9 69.0% feature · violin
gastrodermis_mitotic 46 XP_044178856.1 (Amil_Amillepora11105) 3.89 13.9 40.9% feature · violin
gastrodermis_mitotic 47 XP_029210411.2 (Amil_Amillepora13276) 2.75 13.8 47.0% feature · violin
gastrodermis_mitotic 48 Amil_orphan_4534 not mapped 5.40 13.7 37.6% feature · violin
gastrodermis_mitotic 49 XP_029186377.1 (Amil_Amillepora27337) 2.54 13.6 48.0% feature · violin
gastrodermis_mitotic 50 XP_029214548.2 (Amil_Amillepora08928) 3.69 13.6 40.5% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 8 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

TOP