Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora09062 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
gastrodermis_alga_hosting 1 XP_029185780.2 (Amil_Amillepora24472) 8.32 81.5 99.9% feature · violin
gastrodermis_alga_hosting 2 XP_029187546.2 (Amil_Amillepora01594) 10.06 81.3 99.6% feature · violin
gastrodermis_alga_hosting 3 XP_029195041.2 (Amil_Amillepora22180) 6.76 81.2 99.8% feature · violin
gastrodermis_alga_hosting 4 Amil_Amillepora06598 not mapped 8.24 81.1 99.6% feature · violin
gastrodermis_alga_hosting 5 XP_044172859.1 (Amil_Amillepora04961) 10.04 81.0 99.2% feature · violin
gastrodermis_alga_hosting 6 Amil_Amillepora16670 not mapped 4.70 80.6 99.7% feature · violin
gastrodermis_alga_hosting 7 XP_044173263.1 (Amil_Amillepora05799) 9.48 79.9 97.9% feature · violin
gastrodermis_alga_hosting 8 XP_044176460.1 (Amil_Amillepora06896) 9.89 78.3 96.0% feature · violin
gastrodermis_alga_hosting 9 XP_044170547.1 (Amil_Amillepora36949) 10.16 76.2 93.5% feature · violin
gastrodermis_alga_hosting 10 Amil_Amillepora28371 not mapped 9.19 71.2 87.5% feature · violin
gastrodermis_alga_hosting 11 XP_044176465.1 (Amil_Amillepora06894) 10.18 70.7 86.7% feature · violin
gastrodermis_alga_hosting 12 XP_029204529.2 (Amil_Amillepora24890) 5.76 68.5 87.4% feature · violin
gastrodermis_alga_hosting 13 XP_029197467.1 (Amil_Amillepora15179) 3.84 67.5 92.3% feature · violin
gastrodermis_alga_hosting 14 XP_029195230.2 (Amil_Amillepora08056) 5.02 65.4 85.0% feature · violin
gastrodermis_alga_hosting 15 XP_029179838.1 (Amil_Amillepora20527) 6.86 65.3 81.4% feature · violin
gastrodermis_alga_hosting 16 XP_044172513.1 (Amil_Amillepora04293) 9.53 64.0 78.7% feature · violin
gastrodermis_alga_hosting 17 Amil_orphan_5432 not mapped 4.18 63.7 89.5% feature · violin
gastrodermis_alga_hosting 18 XP_029207244.2 (Amil_Amillepora29638) 3.32 62.6 90.3% feature · violin
gastrodermis_alga_hosting 19 XP_029185880.2 (Amil_Amillepora17007) 8.79 62.3 76.6% feature · violin
gastrodermis_alga_hosting 20 XP_029190656.1 (Amil_Amillepora04922) 4.00 61.7 92.5% feature · violin
gastrodermis_alga_hosting 21 XP_029185598.1 (Amil_Amillepora24755) 5.59 61.7 78.9% feature · violin
gastrodermis_alga_hosting 22 XP_029195377.2 (Amil_Amillepora22006) 5.11 61.4 82.2% feature · violin
gastrodermis_alga_hosting 23 XP_029191107.2 (Amil_Amillepora08785) 4.58 60.7 83.1% feature · violin
gastrodermis_alga_hosting 24 XP_044177500.1 (Amil_Amillepora08258) 9.03 59.3 72.9% feature · violin
gastrodermis_alga_hosting 25 XP_029201314.2 (Amil_Amillepora11093) 6.88 57.9 72.2% feature · violin
gastrodermis_alga_hosting 26 XP_044173691.1 (Amil_Amillepora22183) 4.31 57.0 90.1% feature · violin
gastrodermis_alga_hosting 27 XP_044164234.1 (Amil_Amillepora24889) 9.02 53.8 66.2% feature · violin
gastrodermis_alga_hosting 28 Amil_orphan_6808 not mapped 3.27 53.6 80.7% feature · violin
gastrodermis_alga_hosting 29 XP_029188238.2 (Amil_Amillepora09062) 8.80 53.5 65.9% feature · violin
gastrodermis_alga_hosting 30 XP_029206678.2 (Amil_Amillepora32821) 7.27 53.1 66.1% feature · violin
gastrodermis_alga_hosting 31 XP_044183095.1 (Amil_Amillepora18329) 5.95 52.4 66.2% feature · violin
gastrodermis_alga_hosting 32 XP_044172942.1 (Amil_Amillepora05110) 9.60 50.8 62.4% feature · violin
gastrodermis_alga_hosting 33 XP_029187182.1 (Amil_Amillepora19383) 7.87 50.7 62.7% feature · violin
gastrodermis_alga_hosting 34 XP_029188237.2 (Amil_Amillepora09061) 8.77 50.5 62.1% feature · violin
gastrodermis_alga_hosting 35 XP_029196858.1 (Amil_Amillepora10744) 4.81 50.4 66.3% feature · violin
gastrodermis_alga_hosting 36 XP_029193134.1 (Amil_Amillepora23278) 7.00 49.9 62.4% feature · violin
gastrodermis_alga_hosting 37 XP_029187046.1 (Amil_Amillepora20112) 3.14 49.7 75.4% feature · violin
gastrodermis_alga_hosting 38 XP_029194919.2 (Amil_Amillepora11727) 4.64 49.6 65.4% feature · violin
gastrodermis_alga_hosting 39 XP_029191148.2 (Amil_Amillepora08778) 4.31 49.4 66.7% feature · violin
gastrodermis_alga_hosting 40 XP_029179617.2 (Amil_Amillepora06985) 4.93 48.9 63.7% feature · violin
gastrodermis_alga_hosting 41 XP_029197275.2 (Amil_Amillepora07620) 7.32 48.7 60.4% feature · violin
gastrodermis_alga_hosting 42 Amil_orphan_2120 not mapped 4.29 48.2 65.5% feature · violin
gastrodermis_alga_hosting 43 XP_029214154.2 (Amil_Amillepora24222) 7.46 47.8 59.2% feature · violin
gastrodermis_alga_hosting 44 XP_029212558.1 (Amil_Amillepora21918) 4.62 47.1 62.2% feature · violin
gastrodermis_alga_hosting 45 XP_044179836.1 (Amil_Amillepora12299) 6.76 47.0 58.5% feature · violin
gastrodermis_alga_hosting 46 Amil_orphan_9512 not mapped 7.73 46.8 57.9% feature · violin
gastrodermis_alga_hosting 47 Amil_orphan_12983 not mapped 8.58 46.1 56.7% feature · violin
gastrodermis_alga_hosting 48 Amil_orphan_5425 not mapped 7.18 45.3 56.5% feature · violin
gastrodermis_alga_hosting 49 XP_029187462.2 (Amil_Amillepora15512) 7.67 44.7 55.3% feature · violin
gastrodermis_alga_hosting 50 XP_029202552.1 (Amil_Amillepora21892) 6.06 44.1 55.6% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 9 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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