Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora09936 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
epidermis_like_1 1 XP_044175887.1 (Amil_Amillepora09108) 8.10 33.9 99.5% feature · violin
epidermis_like_1 2 XP_029190041.2 (Amil_Amillepora13082) 7.77 33.9 98.8% feature · violin
epidermis_like_1 3 XP_029195799.2 (Amil_Amillepora25278) 7.42 33.7 98.8% feature · violin
epidermis_like_1 4 XP_029205888.1 (Amil_Amillepora21657) 4.95 33.2 99.3% feature · violin
epidermis_like_1 5 XP_029200966.1 (Amil_Amillepora28569) 6.72 32.9 99.0% feature · violin
epidermis_like_1 6 XP_044174722.1 (Amil_Amillepora09936) 6.56 32.8 97.3% feature · violin
epidermis_like_1 7 Amil_orphan_1146 not mapped 7.39 32.7 96.1% feature · violin
epidermis_like_1 8 XP_029194585.2 (Amil_Amillepora23315) 7.08 32.4 95.1% feature · violin
epidermis_like_1 9 XP_044172439.1 (Amil_Amillepora05813) 7.53 32.0 93.4% feature · violin
epidermis_like_1 10 Amil_Amillepora03992 not mapped 7.65 30.9 91.7% feature · violin
epidermis_like_1 11 XP_029197098.2 (Amil_Amillepora27724) 5.83 30.6 94.6% feature · violin
epidermis_like_1 12 XP_044172822.1 (Amil_Amillepora04870) 6.32 30.5 99.5% feature · violin
epidermis_like_1 13 XP_029194150.2 (Amil_Amillepora03037) 5.76 30.2 91.5% feature · violin
epidermis_like_1 14 Amil_orphan_4737 not mapped 4.74 29.7 97.3% feature · violin
epidermis_like_1 15 XP_029194331.1 (Amil_Amillepora25014) 3.85 29.4 95.9% feature · violin
epidermis_like_1 16 XP_029184364.1 (Amil_Amillepora09117) 3.22 28.6 99.8% feature · violin
epidermis_like_1 17 XP_029195839.2 (Amil_Amillepora25275) 4.50 28.5 92.2% feature · violin
epidermis_like_1 18 Amil_Amillepora19980 not mapped 7.35 28.2 82.7% feature · violin
epidermis_like_1 19 XP_029199624.1 (Amil_Amillepora04504) 4.78 28.2 91.2% feature · violin
epidermis_like_1 20 Amil_orphan_1482 not mapped 3.32 27.9 99.0% feature · violin
epidermis_like_1 21 XP_029180982.1 (Amil_Amillepora10647) 5.60 27.2 82.5% feature · violin
epidermis_like_1 22 XP_044162991.1 (Amil_Amillepora15760) 5.71 26.6 99.0% feature · violin
epidermis_like_1 23 XP_029194173.2 (Amil_Amillepora03047) 6.22 25.6 75.9% feature · violin
epidermis_like_1 24 Amil_orphan_557 not mapped 4.72 25.4 79.8% feature · violin
epidermis_like_1 25 Amil_Amillepora06637 not mapped 4.79 25.1 96.8% feature · violin
epidermis_like_1 26 Amil_orphan_4743 not mapped 4.38 25.1 88.3% feature · violin
epidermis_like_1 27 Amil_orphan_3726 not mapped 3.69 24.3 84.2% feature · violin
epidermis_like_1 28 Amil_orphan_10006 not mapped 3.70 24.1 96.6% feature · violin
epidermis_like_1 29 XP_044177783.1 (Amil_Amillepora19982) 6.51 24.1 70.8% feature · violin
epidermis_like_1 30 Amil_Amillepora34856 not mapped 4.12 23.8 88.8% feature · violin
epidermis_like_1 31 XP_029188346.1 (Amil_Amillepora07790) 6.13 23.8 70.6% feature · violin
epidermis_like_1 32 XP_029186520.1 (Amil_Amillepora10796) 4.41 23.6 74.9% feature · violin
epidermis_like_1 33 XP_044181521.1 (Amil_Amillepora21396) 1.74 22.9 98.8% feature · violin
epidermis_like_1 34 XP_029205908.1 (Amil_Amillepora32267) 1.74 22.5 99.3% feature · violin
epidermis_like_1 35 XP_029200625.2 (Amil_Amillepora04422) 5.33 21.9 65.9% feature · violin
epidermis_like_1 36 XP_029190520.2 (Amil_Amillepora08556) 1.96 21.8 96.8% feature · violin
epidermis_like_1 37 XP_029190985.1 (Amil_Amillepora14676) 2.57 21.8 96.6% feature · violin
epidermis_like_1 38 XP_044184723.1 (Amil_Amillepora13708) 4.77 21.3 65.9% feature · violin
epidermis_like_1 39 XP_029190596.1 (Amil_Amillepora04936) 3.94 21.3 70.3% feature · violin
epidermis_like_1 40 XP_029188976.1 (Amil_Amillepora26019) 4.79 21.1 65.0% feature · violin
epidermis_like_1 41 XP_029199986.2 (Amil_Amillepora29587) 2.82 21.1 87.6% feature · violin
epidermis_like_1 42 Amil_orphan_4534 not mapped 6.59 21.0 61.6% feature · violin
epidermis_like_1 43 XP_029188253.2 (Amil_Amillepora09101) 4.30 21.0 66.9% feature · violin
epidermis_like_1 44 XP_029210292.1 (Amil_Amillepora32097) 5.11 20.7 62.5% feature · violin
epidermis_like_1 45 Amil_orphan_13412 not mapped 2.49 20.5 96.8% feature · violin
epidermis_like_1 46 Amil_orphan_6636 not mapped 5.70 20.4 60.6% feature · violin
epidermis_like_1 47 XP_029190855.1 (Amil_Amillepora21381) 1.94 20.1 97.6% feature · violin
epidermis_like_1 48 Amil_Amillepora05812 not mapped 6.94 20.0 58.4% feature · violin
epidermis_like_1 49 XP_029195778.1 (Amil_Amillepora20386) 1.70 20.0 98.1% feature · violin
epidermis_like_1 50 XP_044176775.1 (Amil_Amillepora08357) 4.19 19.8 71.5% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 15 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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