Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora10195 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
germline_oocytes 1 XP_029189077.2 (Amil_Amillepora05932) 10.54 32.1 97.8% feature · violin
germline_oocytes 2 XP_029205888.1 (Amil_Amillepora21657) 5.49 32.0 99.5% feature · violin
germline_oocytes 3 XP_029184364.1 (Amil_Amillepora09117) 4.44 32.0 99.7% feature · violin
germline_oocytes 4 XP_029212881.1 (Amil_Amillepora04721) 8.57 31.7 97.3% feature · violin
germline_oocytes 5 XP_029196769.2 (Amil_Amillepora18860) 9.47 31.5 96.2% feature · violin
germline_oocytes 6 XP_029206377.2 (Amil_Amillepora03881) 7.50 30.8 95.6% feature · violin
germline_oocytes 7 XP_029200966.1 (Amil_Amillepora28569) 6.62 30.8 98.9% feature · violin
germline_oocytes 8 XP_029182995.1 (Amil_Amillepora10847) 7.35 30.7 94.5% feature · violin
germline_oocytes 9 Amil_orphan_1482 not mapped 3.64 28.1 98.9% feature · violin
germline_oocytes 10 XP_029180124.1 (Amil_Amillepora03290) 3.46 27.5 99.7% feature · violin
germline_oocytes 11 XP_044172439.1 (Amil_Amillepora05813) 6.72 27.2 85.2% feature · violin
germline_oocytes 12 Amil_orphan_3015 not mapped 4.80 27.1 91.8% feature · violin
germline_oocytes 13 XP_029197098.2 (Amil_Amillepora27724) 6.10 26.6 85.2% feature · violin
germline_oocytes 14 XP_044180086.1 (Amil_Amillepora24445) 7.88 25.9 79.8% feature · violin
germline_oocytes 15 XP_029192641.2 (Amil_Amillepora01079) 9.59 25.6 78.1% feature · violin
germline_oocytes 16 Amil_Amillepora11731 not mapped 3.94 25.5 89.9% feature · violin
germline_oocytes 17 XP_029204742.2 (Amil_Amillepora24412) 6.96 25.3 78.7% feature · violin
germline_oocytes 18 XP_029186926.2 (Amil_Amillepora10195) 8.23 25.2 77.3% feature · violin
germline_oocytes 19 XP_029191463.2 (Amil_Amillepora22078) 7.04 25.0 77.6% feature · violin
germline_oocytes 20 XP_044174722.1 (Amil_Amillepora09936) 5.43 25.0 82.0% feature · violin
germline_oocytes 21 XP_029191464.2 (Amil_Amillepora23427) 7.68 25.0 76.8% feature · violin
germline_oocytes 22 XP_029186576.2 (Amil_Amillepora10805) 7.51 24.8 76.2% feature · violin
germline_oocytes 23 XP_029195799.2 (Amil_Amillepora25278) 5.23 24.2 80.6% feature · violin
germline_oocytes 24 XP_044172822.1 (Amil_Amillepora04870) 5.31 24.2 88.8% feature · violin
germline_oocytes 25 XP_029202538.2 (Amil_Amillepora21900) 4.20 23.5 80.6% feature · violin
germline_oocytes 26 XP_029188670.2 (Amil_Amillepora23221) 6.55 23.3 72.7% feature · violin
germline_oocytes 27 XP_029212897.2 (Amil_Amillepora04338) 6.34 23.1 72.1% feature · violin
germline_oocytes 28 XP_029212574.1 (Amil_Amillepora21949) 4.51 23.0 76.5% feature · violin
germline_oocytes 29 XP_029194331.1 (Amil_Amillepora25014) 3.27 22.9 86.1% feature · violin
germline_oocytes 30 XP_044174465.1 (Amil_Amillepora00165) 7.40 22.9 70.5% feature · violin
germline_oocytes 31 Amil_orphan_1139 not mapped 7.33 22.8 70.2% feature · violin
germline_oocytes 32 XP_044172939.1 (Amil_Amillepora05107) 6.54 22.2 69.1% feature · violin
germline_oocytes 33 XP_029185076.1 (Amil_Amillepora00119) 6.92 22.2 68.6% feature · violin
germline_oocytes 34 XP_029194453.2 (Amil_Amillepora05038) 7.23 22.1 68.0% feature · violin
germline_oocytes 35 Amil_Amillepora03992 not mapped 5.45 21.9 73.2% feature · violin
germline_oocytes 36 XP_029190041.2 (Amil_Amillepora13082) 4.40 21.8 80.1% feature · violin
germline_oocytes 37 XP_044174488.1 (Amil_Amillepora09525) 6.21 21.6 67.8% feature · violin
germline_oocytes 38 XP_044177783.1 (Amil_Amillepora19982) 6.42 21.6 67.5% feature · violin
germline_oocytes 39 XP_044162991.1 (Amil_Amillepora15760) 4.78 21.3 88.5% feature · violin
germline_oocytes 40 XP_044173253.1 (Amil_Amillepora05769) 6.23 21.0 65.6% feature · violin
germline_oocytes 41 XP_029209118.2 (Amil_Amillepora31040) 2.63 20.7 96.7% feature · violin
germline_oocytes 42 XP_029180062.2 (Amil_Amillepora01266) 6.04 20.7 64.8% feature · violin
germline_oocytes 43 XP_029189911.2 (Amil_Amillepora13212) 6.03 20.6 64.8% feature · violin
germline_oocytes 44 XP_029192249.2 (Amil_Amillepora14468) 4.90 20.3 66.4% feature · violin
germline_oocytes 45 XP_029191462.2 (Amil_Amillepora23426) 7.31 20.0 61.5% feature · violin
germline_oocytes 46 XP_029188168.2 (Amil_Amillepora09039) 7.10 19.9 61.5% feature · violin
germline_oocytes 47 XP_029203749.2 (Amil_Amillepora10468) 5.59 19.9 63.1% feature · violin
germline_oocytes 48 Amil_Amillepora01098 not mapped 7.40 19.8 60.9% feature · violin
germline_oocytes 49 XP_029200605.2 (Amil_Amillepora10629) 6.20 19.8 61.7% feature · violin
germline_oocytes 50 XP_029197397.2 (Amil_Amillepora03331) 5.68 19.4 61.2% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 6 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

TOP