Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora12488 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
cnidocyte 1 Amil_orphan_9321 not mapped 10.64 15.9 100.0% feature · violin
cnidocyte 2 XP_044179494.1 (Amil_Amillepora12454) 10.58 15.9 100.0% feature · violin
cnidocyte 3 XP_044179495.1 (Amil_Amillepora12455) 10.94 15.9 100.0% feature · violin
cnidocyte 4 XP_029187901.1 (Amil_Amillepora12539) 11.40 15.9 100.0% feature · violin
cnidocyte 5 XP_029204270.1 (Amil_Amillepora08887) 10.18 15.7 98.8% feature · violin
cnidocyte 6 XP_029187975.2 (Amil_Amillepora12543) 10.56 15.5 97.6% feature · violin
cnidocyte 7 XP_029204241.1 (Amil_Amillepora08886) 10.18 15.3 96.5% feature · violin
cnidocyte 8 XP_029192025.1 (Amil_Amillepora05992) 6.55 15.3 98.8% feature · violin
cnidocyte 9 Amil_orphan_8570 not mapped 11.87 14.9 94.1% feature · violin
cnidocyte 10 XP_029208095.2 (Amil_Amillepora12453) 9.28 14.9 94.1% feature · violin
cnidocyte 11 Amil_Amillepora09627 not mapped 10.32 14.4 90.6% feature · violin
cnidocyte 12 XP_044170676.1 (Amil_Amillepora03704) 11.84 14.2 89.4% feature · violin
cnidocyte 13 Amil_orphan_6936 not mapped 11.37 14.2 89.4% feature · violin
cnidocyte 14 XP_029212125.2 (Amil_Amillepora05775) 9.52 14.2 89.4% feature · violin
cnidocyte 15 XP_029187897.2 (Amil_Amillepora12542) 9.37 13.6 85.9% feature · violin
cnidocyte 16 XP_029196434.1 (Amil_Amillepora04744) 9.73 13.3 83.5% feature · violin
cnidocyte 17 Amil_Amillepora12489 not mapped 9.83 12.9 82.4% feature · violin
cnidocyte 18 XP_029192027.2 (Amil_Amillepora05994) 10.53 12.9 81.2% feature · violin
cnidocyte 19 XP_044177054.1 (Amil_Amillepora07510) 10.82 12.7 80.0% feature · violin
cnidocyte 20 XP_029203472.2 (Amil_Amillepora19086) 10.47 12.7 80.0% feature · violin
cnidocyte 21 XP_029200832.2 (Amil_Amillepora04778) 10.10 12.7 80.0% feature · violin
cnidocyte 22 XP_029187289.1 (Amil_Amillepora24846) 3.06 12.7 97.6% feature · violin
cnidocyte 23 Amil_Amillepora12535 not mapped 8.34 12.6 82.4% feature · violin
cnidocyte 24 XP_029213134.1 (Amil_Amillepora07110) 5.87 12.5 82.4% feature · violin
cnidocyte 25 XP_029198956.2 (Amil_Amillepora20591) 10.10 12.5 78.8% feature · violin
cnidocyte 26 XP_029200386.1 (Amil_Amillepora06358) 9.10 12.5 78.8% feature · violin
cnidocyte 27 XP_029208364.1 (Amil_Amillepora12346) 8.72 12.4 78.8% feature · violin
cnidocyte 28 XP_029194827.2 (Amil_Amillepora01919) 4.00 12.3 90.6% feature · violin
cnidocyte 29 Amil_Amillepora21945 not mapped 8.63 12.3 77.6% feature · violin
cnidocyte 30 XP_029183078.2 (Amil_Amillepora00735) 10.34 12.2 76.5% feature · violin
cnidocyte 31 XP_044177044.1 (Amil_Amillepora07521) 9.66 12.2 76.5% feature · violin
cnidocyte 32 Amil_Amillepora21362 not mapped 9.67 12.2 76.5% feature · violin
cnidocyte 33 XP_029214583.1 (Amil_Amillepora26532) 3.14 12.0 98.8% feature · violin
cnidocyte 34 XP_029199278.2 (Amil_Amillepora12017) 10.50 12.0 75.3% feature · violin
cnidocyte 35 XP_029187899.1 (Amil_Amillepora12540) 10.32 12.0 75.3% feature · violin
cnidocyte 36 XP_029200861.2 (Amil_Amillepora04780) 9.73 12.0 75.3% feature · violin
cnidocyte 37 XP_029188531.1 (Amil_Amillepora03496) 7.64 11.9 75.3% feature · violin
cnidocyte 38 XP_029183083.2 (Amil_Amillepora00734) 11.27 11.8 74.1% feature · violin
cnidocyte 39 XP_029192028.2 (Amil_Amillepora05993) 10.76 11.8 74.1% feature · violin
cnidocyte 40 XP_029187983.2 (Amil_Amillepora12541) 10.29 11.8 74.1% feature · violin
cnidocyte 41 Amil_Amillepora12488 not mapped 10.98 11.8 74.1% feature · violin
cnidocyte 42 XP_029185801.2 (Amil_Amillepora17110) 8.28 11.7 74.1% feature · violin
cnidocyte 43 XP_029205365.2 (Amil_Amillepora15770) 11.32 11.6 72.9% feature · violin
cnidocyte 44 XP_029204646.2 (Amil_Amillepora29009) 10.15 11.6 72.9% feature · violin
cnidocyte 45 XP_029210326.2 (Amil_Amillepora13314) 10.27 11.6 72.9% feature · violin
cnidocyte 46 XP_029193905.1 (Amil_Amillepora04901) 9.03 11.6 72.9% feature · violin
cnidocyte 47 XP_029205944.2 (Amil_Amillepora20628) 10.53 11.4 71.8% feature · violin
cnidocyte 48 XP_029211995.2 (Amil_Amillepora03663) 8.27 11.3 71.8% feature · violin
cnidocyte 49 XP_029206656.2 (Amil_Amillepora07009) 3.81 11.3 85.9% feature · violin
cnidocyte 50 XP_044164386.1 (Amil_Amillepora03044) 10.55 11.2 70.6% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 9 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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