Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora12905 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
gastrodermis_1 1 XP_044164581.1 (Amil_Amillepora26052) 4.72 83.6 88.0% feature · violin
gastrodermis_1 2 Amil_Amillepora21884 not mapped 3.85 81.1 94.3% feature · violin
gastrodermis_1 3 XP_044178975.1 (Amil_Amillepora10946) 3.69 78.3 85.8% feature · violin
gastrodermis_1 4 Amil_Amillepora12321 not mapped 3.58 76.4 92.0% feature · violin
gastrodermis_1 5 XP_044184219.1 (Amil_Amillepora14445) 3.56 75.1 89.6% feature · violin
gastrodermis_1 6 XP_029193134.1 (Amil_Amillepora14820) 3.41 74.3 99.2% feature · violin
gastrodermis_1 7 XP_029187816.2 (Amil_Amillepora10917) 3.93 73.4 86.4% feature · violin
gastrodermis_1 8 Amil_Amillepora10945 not mapped 3.21 68.6 87.0% feature · violin
gastrodermis_1 9 Amil_Amillepora23199 not mapped 4.56 67.6 66.8% feature · violin
gastrodermis_1 10 XP_044170280.1 (Amil_Amillepora03653) 3.17 65.5 82.3% feature · violin
gastrodermis_1 11 Amil_orphan_5431 not mapped 3.03 62.8 93.2% feature · violin
gastrodermis_1 12 XP_044178817.1 (Amil_Amillepora10936) 3.28 61.2 66.9% feature · violin
gastrodermis_1 13 XP_029196062.2 (Amil_Amillepora12905) 3.48 59.9 66.0% feature · violin
gastrodermis_1 14 XP_029188730.1 (Amil_Amillepora23197) 3.36 56.0 59.8% feature · violin
gastrodermis_1 15 XP_044175182.1 (Amil_Amillepora10760) 2.94 55.6 65.7% feature · violin
gastrodermis_1 16 XP_029190249.1 (Amil_Amillepora27448) 3.63 54.8 56.5% feature · violin
gastrodermis_1 17 XP_044177016.1 (Amil_Amillepora00765) 2.83 52.8 61.9% feature · violin
gastrodermis_1 18 XP_044164160.1 (Amil_Amillepora25073) 2.51 52.5 88.1% feature · violin
gastrodermis_1 19 XP_044175116.1 (Amil_Amillepora10630) 2.63 52.2 66.1% feature · violin
gastrodermis_1 20 XP_029197443.2 (Amil_Amillepora15207) 2.58 50.9 91.8% feature · violin
gastrodermis_1 21 XP_029188703.2 (Amil_Amillepora23165) 2.73 50.8 96.2% feature · violin
gastrodermis_1 22 XP_044177626.1 (Amil_Amillepora08383) 3.75 48.8 53.0% feature · violin
gastrodermis_1 23 XP_029192590.2 (Amil_Amillepora01105) 2.51 48.6 75.7% feature · violin
gastrodermis_1 24 XP_044175386.1 (Amil_Amillepora09610) 2.35 48.3 71.7% feature · violin
gastrodermis_1 25 XP_029189312.2 (Amil_Amillepora24565) 1.88 46.5 88.7% feature · violin
gastrodermis_1 26 XP_044178200.1 (Amil_Amillepora18692) 2.52 46.0 58.2% feature · violin
gastrodermis_1 27 Amil_orphan_9461 not mapped 0.92 45.8 99.4% feature · violin
gastrodermis_1 28 Amil_orphan_8558 not mapped 2.27 44.8 66.5% feature · violin
gastrodermis_1 29 XP_029181425.2 (Amil_Amillepora06594) 2.31 44.8 62.9% feature · violin
gastrodermis_1 30 Amil_orphan_9459 not mapped 0.57 44.6 99.5% feature · violin
gastrodermis_1 31 XP_044180670.1 (Amil_Amillepora24284) 4.13 44.6 43.8% feature · violin
gastrodermis_1 32 XP_029188773.2 (Amil_Amillepora24449) 2.46 44.1 57.8% feature · violin
gastrodermis_1 33 XP_029189101.2 (Amil_Amillepora05916) 3.23 42.2 45.0% feature · violin
gastrodermis_1 34 XP_044179250.1 (Amil_Amillepora12607) 1.85 42.0 77.8% feature · violin
gastrodermis_1 35 Amil_orphan_7961 not mapped 1.78 40.0 68.0% feature · violin
gastrodermis_1 36 XP_029193760.2 (Amil_Amillepora11367) 2.04 38.3 57.5% feature · violin
gastrodermis_1 37 XP_044180779.1 (Amil_Amillepora01447) 2.65 37.9 44.0% feature · violin
gastrodermis_1 38 XP_029193502.2 (Amil_Amillepora20147) 2.24 37.4 49.5% feature · violin
gastrodermis_1 39 Amil_orphan_2977 not mapped 2.65 36.9 47.8% feature · violin
gastrodermis_1 40 XP_029179687.1 (Amil_Amillepora06620) 3.60 36.6 36.8% feature · violin
gastrodermis_1 41 XP_029194846.1 (Amil_Amillepora02634) 1.71 35.5 61.5% feature · violin
gastrodermis_1 42 XP_029188892.2 (Amil_Amillepora26120) 1.75 33.9 51.3% feature · violin
gastrodermis_1 43 XP_029208298.1 (Amil_Amillepora12422) 4.27 33.4 31.8% feature · violin
gastrodermis_1 44 Amil_Amillepora10920 not mapped 3.67 33.0 32.8% feature · violin
gastrodermis_1 45 XP_044162768.1 (Amil_Amillepora02735) 2.53 32.4 38.8% feature · violin
gastrodermis_1 46 XP_029197908.2 (Amil_Amillepora00970) 1.72 32.3 55.0% feature · violin
gastrodermis_1 47 XP_029201700.2 (Amil_Amillepora08260) 1.95 30.9 43.8% feature · violin
gastrodermis_1 48 XP_044180109.1 (Amil_Amillepora24807) 1.69 30.8 48.9% feature · violin
gastrodermis_1 49 XP_044180454.1 (Amil_Amillepora24283) 3.74 30.7 30.2% feature · violin
gastrodermis_1 50 Amil_orphan_9457 not mapped 0.49 30.5 98.4% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 12 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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