Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora13331 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
immune_1 1 XP_029179359.1 (Amil_Amillepora01370) 6.05 38.9 99.2% feature · violin
immune_1 2 XP_029190047.2 (Amil_Amillepora13090) 10.79 38.6 98.1% feature · violin
immune_1 3 XP_029195738.1 (Amil_Amillepora20363) 10.49 38.5 97.7% feature · violin
immune_1 4 XP_029187030.2 (Amil_Amillepora20093) 7.41 36.1 93.8% feature · violin
immune_1 5 XP_029209118.2 (Amil_Amillepora31040) 4.47 36.0 99.2% feature · violin
immune_1 6 XP_029198293.2 (Amil_Amillepora06303) 12.16 35.2 89.3% feature · violin
immune_1 7 Amil_orphan_7783 not mapped 10.98 34.3 87.0% feature · violin
immune_1 8 XP_029199742.2 (Amil_Amillepora07948) 8.06 33.9 86.6% feature · violin
immune_1 9 XP_029186332.2 (Amil_Amillepora27305) 9.37 33.4 84.9% feature · violin
immune_1 10 Amil_orphan_7061 not mapped 10.16 33.4 85.3% feature · violin
immune_1 11 XP_029195425.2 (Amil_Amillepora14044) 11.68 32.4 82.1% feature · violin
immune_1 12 XP_044176258.1 (Amil_Amillepora06577) 10.81 31.8 80.6% feature · violin
immune_1 13 Amil_Amillepora18069 not mapped 8.18 31.5 80.4% feature · violin
immune_1 14 XP_029199775.2 (Amil_Amillepora07947) 6.10 30.9 81.4% feature · violin
immune_1 15 XP_029185023.1 (Amil_Amillepora00163) 4.31 30.8 85.1% feature · violin
immune_1 16 Amil_orphan_5579 not mapped 6.43 30.5 79.7% feature · violin
immune_1 17 Amil_orphan_11791 not mapped 10.34 30.4 77.2% feature · violin
immune_1 18 XP_029185573.2 (Amil_Amillepora18441) 9.47 30.4 77.2% feature · violin
immune_1 19 XP_029195377.2 (Amil_Amillepora22006) 5.22 30.2 83.8% feature · violin
immune_1 20 XP_029190622.2 (Amil_Amillepora04977) 3.26 29.4 87.6% feature · violin
immune_1 21 XP_029197586.2 (Amil_Amillepora30933) 9.41 29.1 73.8% feature · violin
immune_1 22 XP_029194031.2 (Amil_Amillepora19016) 4.07 28.5 80.0% feature · violin
immune_1 23 XP_029195191.2 (Amil_Amillepora08090) 7.53 28.1 71.9% feature · violin
immune_1 24 XP_029203614.2 (Amil_Amillepora09933) 4.40 27.4 76.5% feature · violin
immune_1 25 XP_044181557.1 (Amil_Amillepora21001) 5.18 26.5 71.6% feature · violin
immune_1 26 XP_029197770.2 (Amil_Amillepora00844) 9.25 26.2 66.7% feature · violin
immune_1 27 XP_029189873.2 (Amil_Amillepora16483) 4.61 25.9 71.0% feature · violin
immune_1 28 Amil_Amillepora04693 not mapped 8.29 25.7 65.5% feature · violin
immune_1 29 XP_044163694.1 (Amil_Amillepora15448) 7.78 25.6 65.5% feature · violin
immune_1 30 XP_029188142.2 (Amil_Amillepora09074) 4.95 24.9 67.2% feature · violin
immune_1 31 XP_029191935.2 (Amil_Amillepora09820) 3.77 24.5 71.9% feature · violin
immune_1 32 XP_029180118.2 (Amil_Amillepora03308) 11.14 24.4 61.8% feature · violin
immune_1 33 XP_029202770.2 (Amil_Amillepora13724) 5.92 24.3 63.7% feature · violin
immune_1 34 XP_044177122.1 (Amil_Amillepora06910) 5.06 24.3 66.1% feature · violin
immune_1 35 XP_044162912.1 (Amil_Amillepora15330) 0.85 23.0 100.0% feature · violin
immune_1 36 XP_029206219.2 (Amil_Amillepora20678) 2.91 22.8 77.8% feature · violin
immune_1 37 XP_044176267.1 (Amil_Amillepora06579) 11.26 22.5 57.1% feature · violin
immune_1 38 XP_029211600.2 (Amil_Amillepora13331) 7.90 22.0 56.3% feature · violin
immune_1 39 XP_044179350.1 (Amil_Amillepora11455) 11.73 21.9 55.4% feature · violin
immune_1 40 XP_029194299.1 (Amil_Amillepora25000) 2.51 21.8 73.4% feature · violin
immune_1 41 XP_044179358.1 (Amil_Amillepora11456) 10.19 21.6 54.8% feature · violin
immune_1 42 XP_029187046.1 (Amil_Amillepora20112) 2.86 21.5 70.6% feature · violin
immune_1 43 XP_029182986.2 (Amil_Amillepora10849) 6.46 21.2 55.0% feature · violin
immune_1 44 Amil_orphan_8715 not mapped 8.47 20.8 52.9% feature · violin
immune_1 45 XP_029204604.1 (Amil_Amillepora24892) 3.59 20.6 60.8% feature · violin
immune_1 46 XP_029191147.1 (Amil_Amillepora08786) 7.48 20.4 52.4% feature · violin
immune_1 47 XP_029191022.2 (Amil_Amillepora14669) 2.85 20.4 83.2% feature · violin
immune_1 48 XP_044175846.1 (Amil_Amillepora09019) 6.25 20.1 52.2% feature · violin
immune_1 49 XP_044178814.1 (Amil_Amillepora12560) 4.34 19.8 54.8% feature · violin
immune_1 50 Amil_Amillepora32578 not mapped 9.84 19.4 49.3% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 8 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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