Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora14840 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
calicoblast 1 XP_029212680.2 (Amil_Amillepora19313) 10.00 61.9 97.8% feature · violin
calicoblast 2 XP_029188528.2 (Amil_Amillepora03541) 9.33 61.7 97.9% feature · violin
calicoblast 3 XP_029194632.2 (Amil_Amillepora10110) 9.96 61.1 96.7% feature · violin
calicoblast 4 XP_044178152.1 (Amil_Amillepora19488) 8.21 55.5 88.5% feature · violin
calicoblast 5 Amil_Amillepora19494 not mapped 6.11 54.7 94.0% feature · violin
calicoblast 6 XP_029191022.2 (Amil_Amillepora14669) 4.84 54.3 97.9% feature · violin
calicoblast 7 XP_044171917.1 (Amil_Amillepora37625) 6.84 54.2 87.8% feature · violin
calicoblast 8 XP_029187997.1 (Amil_Amillepora12612) 8.73 53.5 85.1% feature · violin
calicoblast 9 XP_044166545.1 (Amil_Amillepora30757) 4.76 53.1 92.7% feature · violin
calicoblast 10 XP_029200966.1 (Amil_Amillepora28569) 5.21 52.2 94.8% feature · violin
calicoblast 11 Amil_orphan_9647 not mapped 8.80 51.6 81.9% feature · violin
calicoblast 12 XP_029180381.2 (Amil_Amillepora32633) 5.57 51.2 87.8% feature · violin
calicoblast 13 XP_044173859.1 (Amil_Amillepora22520) 5.23 50.8 85.6% feature · violin
calicoblast 14 XP_029202432.1 (Amil_Amillepora15356) 6.44 49.7 80.8% feature · violin
calicoblast 15 XP_029193156.1 (Amil_Amillepora14840) 10.24 49.3 78.1% feature · violin
calicoblast 16 XP_029190149.2 (Amil_Amillepora24738) 4.00 49.1 88.7% feature · violin
calicoblast 17 XP_029194637.2 (Amil_Amillepora10108) 9.15 48.3 76.6% feature · violin
calicoblast 18 XP_029182524.1 (Amil_Amillepora37624) 6.24 48.2 79.2% feature · violin
calicoblast 19 Amil_Amillepora14146 not mapped 8.81 47.8 75.9% feature · violin
calicoblast 20 Amil_Amillepora31412 not mapped 3.64 46.8 86.1% feature · violin
calicoblast 21 XP_044185208.1 (Amil_Amillepora14877) 4.89 46.6 80.0% feature · violin
calicoblast 22 XP_029203647.1 (Amil_Amillepora03937) 3.38 45.4 88.3% feature · violin
calicoblast 23 Amil_Amillepora12339 not mapped 6.53 45.3 73.5% feature · violin
calicoblast 24 Amil_orphan_13556 not mapped 7.93 45.3 72.3% feature · violin
calicoblast 25 XP_029180000.1 (Amil_Amillepora01381) 8.06 45.0 71.6% feature · violin
calicoblast 26 XP_029214381.2 (Amil_Amillepora01399) 7.98 44.2 70.5% feature · violin
calicoblast 27 XP_029188500.2 (Amil_Amillepora03548) 4.15 44.1 81.7% feature · violin
calicoblast 28 Amil_orphan_871 not mapped 4.62 43.9 75.9% feature · violin
calicoblast 29 XP_029188324.2 (Amil_Amillepora19589) 6.91 43.9 70.5% feature · violin
calicoblast 30 XP_029185183.2 (Amil_Amillepora13111) 3.59 43.8 84.4% feature · violin
calicoblast 31 XP_029189770.2 (Amil_Amillepora24667) 3.76 43.6 80.9% feature · violin
calicoblast 32 XP_044167764.1 (Amil_Amillepora33951) 8.95 43.6 69.1% feature · violin
calicoblast 33 XP_044162768.1 (Amil_Amillepora02735) 4.22 43.5 80.7% feature · violin
calicoblast 34 XP_029198367.1 (Amil_Amillepora29197) 6.11 43.3 70.9% feature · violin
calicoblast 35 XP_029204735.2 (Amil_Amillepora24415) 5.14 43.1 72.0% feature · violin
calicoblast 36 XP_029190432.2 (Amil_Amillepora08329) 3.55 42.9 83.3% feature · violin
calicoblast 37 Amil_Amillepora27365 not mapped 8.01 42.8 68.1% feature · violin
calicoblast 38 XP_029195299.2 (Amil_Amillepora17943) 8.83 42.7 67.7% feature · violin
calicoblast 39 XP_029202177.2 (Amil_Amillepora13018) 8.88 41.8 66.4% feature · violin
calicoblast 40 XP_029183049.2 (Amil_Amillepora04249) 4.81 41.4 70.5% feature · violin
calicoblast 41 XP_029187982.2 (Amil_Amillepora12613) 8.25 41.2 65.8% feature · violin
calicoblast 42 XP_029209647.2 (Amil_Amillepora13527) 5.09 41.1 69.4% feature · violin
calicoblast 43 XP_029198080.1 (Amil_Amillepora25026) 5.79 41.1 67.4% feature · violin
calicoblast 44 Amil_Amillepora19493 not mapped 5.52 41.0 67.5% feature · violin
calicoblast 45 XP_044162912.1 (Amil_Amillepora15330) 0.76 40.6 100.0% feature · violin
calicoblast 46 Amil_Amillepora07717 not mapped 2.14 40.4 99.2% feature · violin
calicoblast 47 Amil_orphan_14473 not mapped 5.91 40.2 65.9% feature · violin
calicoblast 48 XP_029202112.2 (Amil_Amillepora26802) 9.06 40.1 63.5% feature · violin
calicoblast 49 XP_044175182.1 (Amil_Amillepora10759) 9.05 39.9 63.2% feature · violin
calicoblast 50 XP_029207817.2 (Amil_Amillepora30730) 4.10 39.7 71.7% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 11 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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