Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora16761 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
immune_2 1 XP_029195738.1 (Amil_Amillepora20363) 8.17 19.9 100.0% feature · violin
immune_2 2 XP_029195664.1 (Amil_Amillepora20367) 13.30 19.8 95.8% feature · violin
immune_2 3 XP_029185666.2 (Amil_Amillepora34731) 11.66 19.5 94.4% feature · violin
immune_2 4 XP_029183358.2 (Amil_Amillepora07051) 11.60 19.3 93.7% feature · violin
immune_2 5 XP_044174117.1 (Amil_Amillepora23283) 6.68 19.0 94.4% feature · violin
immune_2 6 XP_029191176.2 (Amil_Amillepora16671) 5.06 18.7 95.8% feature · violin
immune_2 7 XP_029209118.2 (Amil_Amillepora31040) 4.57 18.6 98.6% feature · violin
immune_2 8 XP_029190047.2 (Amil_Amillepora13090) 8.11 18.3 91.6% feature · violin
immune_2 9 XP_029180381.2 (Amil_Amillepora32633) 5.94 18.3 95.1% feature · violin
immune_2 10 XP_029206219.2 (Amil_Amillepora20678) 4.73 18.3 95.1% feature · violin
immune_2 11 XP_029205889.2 (Amil_Amillepora21658) 5.94 18.1 91.6% feature · violin
immune_2 12 XP_029187030.2 (Amil_Amillepora20093) 6.01 18.0 94.4% feature · violin
immune_2 13 XP_029195377.2 (Amil_Amillepora22006) 5.49 17.9 94.4% feature · violin
immune_2 14 Amil_Amillepora04041 not mapped 12.66 17.8 86.0% feature · violin
immune_2 15 XP_029192495.2 (Amil_Amillepora04052) 8.89 17.5 85.3% feature · violin
immune_2 16 XP_044172145.1 (Amil_Amillepora04054) 12.56 17.5 84.6% feature · violin
immune_2 17 XP_044183175.1 (Amil_Amillepora26582) 7.20 17.4 86.0% feature · violin
immune_2 18 XP_029198447.2 (Amil_Amillepora03317) 11.56 17.3 83.9% feature · violin
immune_2 19 Amil_orphan_2950 not mapped 11.96 17.2 83.2% feature · violin
immune_2 20 XP_029187046.1 (Amil_Amillepora20112) 3.95 16.8 93.7% feature · violin
immune_2 21 XP_029203378.2 (Amil_Amillepora18812) 12.41 16.7 81.1% feature · violin
immune_2 22 XP_029192497.2 (Amil_Amillepora04051) 11.10 16.7 81.1% feature · violin
immune_2 23 Amil_orphan_5322 not mapped 9.41 16.7 81.1% feature · violin
immune_2 24 Amil_Amillepora07717 not mapped 2.98 16.5 97.2% feature · violin
immune_2 25 XP_044181557.1 (Amil_Amillepora21001) 5.01 16.4 87.4% feature · violin
immune_2 26 XP_029185661.1 (Amil_Amillepora34734) 9.51 16.3 79.0% feature · violin
immune_2 27 XP_044178184.1 (Amil_Amillepora18782) 11.07 16.0 77.6% feature · violin
immune_2 28 XP_044183469.1 (Amil_Amillepora27258) 2.82 15.8 94.4% feature · violin
immune_2 29 XP_044173337.1 (Amil_Amillepora05965) 3.76 15.8 95.8% feature · violin
immune_2 30 XP_044164388.1 (Amil_Amillepora25076) 4.72 15.7 85.3% feature · violin
immune_2 31 XP_029186326.2 (Amil_Amillepora24682) 4.53 15.6 86.0% feature · violin
immune_2 32 XP_029182612.2 (Amil_Amillepora16761) 11.59 15.4 74.8% feature · violin
immune_2 33 XP_044172137.1 (Amil_Amillepora04039) 12.05 15.3 74.1% feature · violin
immune_2 34 XP_044168557.1 (Amil_Amillepora28966) 8.02 15.1 74.1% feature · violin
immune_2 35 XP_029186513.1 (Amil_Amillepora31932) 3.97 14.9 82.5% feature · violin
immune_2 36 XP_044172327.1 (Amil_Amillepora04044) 11.01 14.7 71.3% feature · violin
immune_2 37 XP_044170039.1 (Amil_Amillepora35427) 9.91 14.7 71.3% feature · violin
immune_2 38 XP_029190622.2 (Amil_Amillepora04977) 2.99 14.7 91.6% feature · violin
immune_2 39 Amil_orphan_7061 not mapped 7.05 14.6 74.1% feature · violin
immune_2 40 XP_029189589.2 (Amil_Amillepora14915) 4.56 14.5 76.9% feature · violin
immune_2 41 XP_029179302.1 (Amil_Amillepora34127) 2.18 14.4 95.8% feature · violin
immune_2 42 XP_029203462.2 (Amil_Amillepora19099) 3.53 14.3 83.2% feature · violin
immune_2 43 XP_044177813.1 (Amil_Amillepora20066) 3.51 14.3 89.5% feature · violin
immune_2 44 XP_029185573.2 (Amil_Amillepora18441) 6.24 14.1 70.6% feature · violin
immune_2 45 XP_044171393.1 (Amil_Amillepora34732) 8.92 14.0 67.8% feature · violin
immune_2 46 XP_044169976.1 (Amil_Amillepora16034) 9.68 13.8 67.1% feature · violin
immune_2 47 XP_029188431.2 (Amil_Amillepora07821) 9.51 13.8 67.1% feature · violin
immune_2 48 XP_044172139.1 (Amil_Amillepora04038) 10.82 13.7 66.4% feature · violin
immune_2 49 XP_029195599.2 (Amil_Amillepora01150) 2.55 13.7 90.2% feature · violin
immune_2 50 XP_044177494.1 (Amil_Amillepora08238) 3.77 13.6 79.7% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 5 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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