Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Showing the cell type that Amil_Amillepora19006 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
neuron_Pou4_Otp 1 Amil_orphan_6935 not mapped 8.31 23.7 90.0% feature · violin
neuron_Pou4_Otp 2 XP_029187030.2 (Amil_Amillepora20093) 6.73 23.6 90.8% feature · violin
neuron_Pou4_Otp 3 XP_029185273.1 (Amil_Amillepora18259) 7.57 23.0 86.0% feature · violin
neuron_Pou4_Otp 4 XP_029196869.1 (Amil_Amillepora10740) 6.93 21.7 81.6% feature · violin
neuron_Pou4_Otp 5 XP_029192193.2 (Amil_Amillepora13179) 7.04 20.8 78.0% feature · violin
neuron_Pou4_Otp 6 XP_029180381.2 (Amil_Amillepora32633) 5.11 20.6 84.0% feature · violin
neuron_Pou4_Otp 7 XP_029206656.2 (Amil_Amillepora07009) 4.64 20.5 82.8% feature · violin
neuron_Pou4_Otp 8 Amil_Amillepora32910 not mapped 9.98 20.4 75.2% feature · violin
neuron_Pou4_Otp 9 XP_029194071.1 (Amil_Amillepora19006) 7.12 20.1 75.2% feature · violin
neuron_Pou4_Otp 10 XP_029211173.2 (Amil_Amillepora19227) 6.03 19.8 75.6% feature · violin
neuron_Pou4_Otp 11 XP_044173671.1 (Amil_Amillepora35443) 8.12 18.5 68.4% feature · violin
neuron_Pou4_Otp 12 XP_044174864.1 (Amil_Amillepora00270) 8.50 18.2 67.2% feature · violin
neuron_Pou4_Otp 13 XP_044179648.1 (Amil_Amillepora01235) 4.55 17.9 72.4% feature · violin
neuron_Pou4_Otp 14 XP_029194022.2 (Amil_Amillepora19007) 3.92 17.8 74.8% feature · violin
neuron_Pou4_Otp 15 Amil_Amillepora30016 not mapped 10.96 17.7 65.2% feature · violin
neuron_Pou4_Otp 16 XP_029205908.1 (Amil_Amillepora32267) 1.90 17.7 96.0% feature · violin
neuron_Pou4_Otp 17 Amil_Amillepora27490 not mapped 7.85 17.6 65.2% feature · violin
neuron_Pou4_Otp 18 XP_029200397.1 (Amil_Amillepora04670) 4.89 17.3 70.4% feature · violin
neuron_Pou4_Otp 19 Amil_orphan_10515 not mapped 10.46 17.1 62.8% feature · violin
neuron_Pou4_Otp 20 XP_029185107.2 (Amil_Amillepora10252) 5.88 16.8 64.4% feature · violin
neuron_Pou4_Otp 21 XP_029196637.2 (Amil_Amillepora33797) 3.22 16.7 78.8% feature · violin
neuron_Pou4_Otp 22 XP_029200123.2 (Amil_Amillepora26110) 3.99 16.6 69.2% feature · violin
neuron_Pou4_Otp 23 XP_029189150.1 (Amil_Amillepora05919) 6.55 16.5 62.0% feature · violin
neuron_Pou4_Otp 24 XP_044173604.1 (Amil_Amillepora21986) 4.79 15.9 63.2% feature · violin
neuron_Pou4_Otp 25 XP_029194051.2 (Amil_Amillepora19005) 5.86 15.6 59.6% feature · violin
neuron_Pou4_Otp 26 XP_029203670.1 (Amil_Amillepora03934) 4.99 15.1 59.2% feature · violin
neuron_Pou4_Otp 27 XP_029203796.2 (Amil_Amillepora05083) 7.72 15.0 55.6% feature · violin
neuron_Pou4_Otp 28 XP_029193167.2 (Amil_Amillepora02933) 7.70 14.6 54.0% feature · violin
neuron_Pou4_Otp 29 XP_029189394.1 (Amil_Amillepora26171) 4.49 14.5 58.0% feature · violin
neuron_Pou4_Otp 30 XP_029197809.2 (Amil_Amillepora15426) 5.50 14.3 55.2% feature · violin
neuron_Pou4_Otp 31 XP_029197264.1 (Amil_Amillepora07614) 6.42 14.3 53.6% feature · violin
neuron_Pou4_Otp 32 XP_029193021.2 (Amil_Amillepora19849) 6.39 14.2 53.2% feature · violin
neuron_Pou4_Otp 33 XP_029211234.1 (Amil_Amillepora19275) 10.44 14.0 51.6% feature · violin
neuron_Pou4_Otp 34 XP_029195395.1 (Amil_Amillepora07361) 5.11 13.9 54.0% feature · violin
neuron_Pou4_Otp 35 XP_029195312.1 (Amil_Amillepora17953) 2.36 13.8 78.4% feature · violin
neuron_Pou4_Otp 36 XP_029205258.2 (Amil_Amillepora06556) 6.35 13.7 51.6% feature · violin
neuron_Pou4_Otp 37 XP_044175385.1 (Amil_Amillepora09604) 5.90 13.7 52.0% feature · violin
neuron_Pou4_Otp 38 XP_044166545.1 (Amil_Amillepora30757) 2.94 13.6 68.0% feature · violin
neuron_Pou4_Otp 39 XP_029211708.2 (Amil_Amillepora15301) 3.14 13.6 62.8% feature · violin
neuron_Pou4_Otp 40 XP_029192860.1 (Amil_Amillepora16875) 5.59 13.5 51.6% feature · violin
neuron_Pou4_Otp 41 XP_044169524.1 (Amil_Amillepora03552) 6.21 13.5 50.8% feature · violin
neuron_Pou4_Otp 42 Amil_Amillepora14296 not mapped 4.90 13.4 52.8% feature · violin
neuron_Pou4_Otp 43 XP_029213453.2 (Amil_Amillepora14766) 4.23 13.4 54.4% feature · violin
neuron_Pou4_Otp 44 XP_044173931.1 (Amil_Amillepora22670) 3.59 13.1 56.4% feature · violin
neuron_Pou4_Otp 45 XP_044180836.1 (Amil_Amillepora20380) 4.79 13.0 51.2% feature · violin
neuron_Pou4_Otp 46 XP_029192814.2 (Amil_Amillepora12755) 5.83 13.0 49.6% feature · violin
neuron_Pou4_Otp 47 XP_044176391.1 (Amil_Amillepora06809) 4.39 12.9 52.0% feature · violin
neuron_Pou4_Otp 48 Amil_Amillepora18868 not mapped 8.30 12.9 48.8% feature · violin
neuron_Pou4_Otp 49 XP_029213134.1 (Amil_Amillepora07110) 5.11 12.8 49.6% feature · violin
neuron_Pou4_Otp 50 XP_029188509.2 (Amil_Amillepora03568) 1.66 12.7 86.4% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 7 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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