Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora20601 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
gastrodermis_muscle 1 Amil_Amillepora07481 not mapped 4.58 45.2 98.5% feature · violin
gastrodermis_muscle 2 XP_029192300.2 (Amil_Amillepora14488) 5.14 44.0 97.7% feature · violin
gastrodermis_muscle 3 Amil_Amillepora13531 not mapped 3.92 40.5 95.8% feature · violin
gastrodermis_muscle 4 XP_029196579.1 (Amil_Amillepora02582) 6.51 40.3 85.2% feature · violin
gastrodermis_muscle 5 XP_029201351.1 (Amil_Amillepora11072) 3.60 40.2 96.9% feature · violin
gastrodermis_muscle 6 XP_029209315.1 (Amil_Amillepora03728) 6.38 39.0 82.7% feature · violin
gastrodermis_muscle 7 Amil_orphan_4127 not mapped 6.80 37.5 78.5% feature · violin
gastrodermis_muscle 8 XP_029181425.2 (Amil_Amillepora06594) 3.68 36.4 95.6% feature · violin
gastrodermis_muscle 9 XP_044170280.1 (Amil_Amillepora03653) 3.71 36.2 98.3% feature · violin
gastrodermis_muscle 10 XP_044184219.1 (Amil_Amillepora14445) 3.56 35.8 98.4% feature · violin
gastrodermis_muscle 11 XP_029193134.1 (Amil_Amillepora14820) 3.28 35.2 99.8% feature · violin
gastrodermis_muscle 12 XP_029197443.2 (Amil_Amillepora15207) 3.59 34.7 99.3% feature · violin
gastrodermis_muscle 13 Amil_Amillepora18158 not mapped 3.65 34.5 86.7% feature · violin
gastrodermis_muscle 14 XP_029187816.2 (Amil_Amillepora10917) 4.10 34.4 97.2% feature · violin
gastrodermis_muscle 15 XP_044178631.1 (Amil_Amillepora20064) 6.43 33.1 69.5% feature · violin
gastrodermis_muscle 16 Amil_orphan_8558 not mapped 3.24 31.6 93.2% feature · violin
gastrodermis_muscle 17 XP_044178975.1 (Amil_Amillepora10946) 3.16 31.4 95.5% feature · violin
gastrodermis_muscle 18 XP_044175386.1 (Amil_Amillepora09610) 3.16 31.4 95.3% feature · violin
gastrodermis_muscle 19 XP_029204420.1 (Amil_Amillepora02524) 3.39 31.1 81.7% feature · violin
gastrodermis_muscle 20 XP_029209303.1 (Amil_Amillepora03727) 7.05 31.1 64.7% feature · violin
gastrodermis_muscle 21 Amil_Amillepora10945 not mapped 3.13 31.1 97.1% feature · violin
gastrodermis_muscle 22 Amil_Amillepora12321 not mapped 3.13 30.4 98.3% feature · violin
gastrodermis_muscle 23 Amil_Amillepora21884 not mapped 3.19 30.4 98.1% feature · violin
gastrodermis_muscle 24 XP_044178621.1 (Amil_Amillepora19975) 6.22 30.1 63.2% feature · violin
gastrodermis_muscle 25 XP_029188703.2 (Amil_Amillepora23165) 3.13 28.7 99.3% feature · violin
gastrodermis_muscle 26 XP_029192590.2 (Amil_Amillepora01105) 3.20 28.4 95.8% feature · violin
gastrodermis_muscle 27 Amil_orphan_197 not mapped 3.41 28.4 73.8% feature · violin
gastrodermis_muscle 28 XP_029193109.1 (Amil_Amillepora22084) 3.11 28.3 75.9% feature · violin
gastrodermis_muscle 29 XP_029204021.1 (Amil_Amillepora26537) 2.34 27.9 85.6% feature · violin
gastrodermis_muscle 30 Amil_Amillepora19974 not mapped 1.93 26.7 95.2% feature · violin
gastrodermis_muscle 31 XP_029188892.2 (Amil_Amillepora26120) 2.57 26.1 79.3% feature · violin
gastrodermis_muscle 32 Amil_Amillepora12323 not mapped 2.87 26.1 74.0% feature · violin
gastrodermis_muscle 33 XP_044180779.1 (Amil_Amillepora01447) 3.01 26.0 71.3% feature · violin
gastrodermis_muscle 34 XP_044177016.1 (Amil_Amillepora00765) 2.68 25.8 80.0% feature · violin
gastrodermis_muscle 35 XP_029197908.2 (Amil_Amillepora00970) 2.71 25.6 82.6% feature · violin
gastrodermis_muscle 36 XP_044180670.1 (Amil_Amillepora24284) 3.42 25.5 66.3% feature · violin
gastrodermis_muscle 37 XP_044178817.1 (Amil_Amillepora10936) 2.65 25.5 80.7% feature · violin
gastrodermis_muscle 38 XP_029193502.2 (Amil_Amillepora20147) 2.69 24.3 74.0% feature · violin
gastrodermis_muscle 39 Amil_Amillepora01102 not mapped 3.08 24.1 73.4% feature · violin
gastrodermis_muscle 40 XP_029190053.2 (Amil_Amillepora13091) 3.19 23.5 60.0% feature · violin
gastrodermis_muscle 41 Amil_Amillepora02583 not mapped 1.71 23.3 86.8% feature · violin
gastrodermis_muscle 42 XP_029190338.2 (Amil_Amillepora27446) 2.91 23.3 64.8% feature · violin
gastrodermis_muscle 43 XP_029190249.1 (Amil_Amillepora27448) 2.66 23.1 68.7% feature · violin
gastrodermis_muscle 44 XP_029201330.1 (Amil_Amillepora11073) 2.02 22.4 79.2% feature · violin
gastrodermis_muscle 45 XP_029188730.1 (Amil_Amillepora23197) 2.50 22.4 69.9% feature · violin
gastrodermis_muscle 46 XP_044164160.1 (Amil_Amillepora25073) 2.38 22.3 96.6% feature · violin
gastrodermis_muscle 47 XP_029184336.2 (Amil_Amillepora20601) 1.91 22.0 84.6% feature · violin
gastrodermis_muscle 48 XP_029191295.2 (Amil_Amillepora15473) 2.80 21.8 59.4% feature · violin
gastrodermis_muscle 49 XP_029194846.1 (Amil_Amillepora02634) 2.18 21.5 81.6% feature · violin
gastrodermis_muscle 50 XP_044162912.1 (Amil_Amillepora15330) 0.48 21.4 100.0% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 13 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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