Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora21603 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
gland_1_Xbp 1 Amil_orphan_213 not mapped 14.61 13.5 100.0% feature · violin
gland_1_Xbp 2 XP_044173274.1 (Amil_Amillepora05829) 13.73 13.5 100.0% feature · violin
gland_1_Xbp 3 XP_029205541.2 (Amil_Amillepora15782) 12.76 12.8 95.1% feature · violin
gland_1_Xbp 4 XP_029191842.2 (Amil_Amillepora14546) 11.82 12.8 95.1% feature · violin
gland_1_Xbp 5 XP_044165113.1 (Amil_Amillepora03147) 13.79 12.4 91.8% feature · violin
gland_1_Xbp 6 Amil_Amillepora22105 not mapped 8.92 12.2 91.8% feature · violin
gland_1_Xbp 7 Amil_orphan_12453 not mapped 12.70 11.9 88.5% feature · violin
gland_1_Xbp 8 XP_044176303.1 (Amil_Amillepora06686) 11.83 11.7 86.9% feature · violin
gland_1_Xbp 9 XP_029212105.2 (Amil_Amillepora05795) 4.84 11.5 91.8% feature · violin
gland_1_Xbp 10 XP_044169544.1 (Amil_Amillepora33769) 13.87 11.3 83.6% feature · violin
gland_1_Xbp 11 XP_044168077.1 (Amil_Amillepora35921) 10.60 11.3 83.6% feature · violin
gland_1_Xbp 12 Amil_orphan_12762 not mapped 11.90 11.1 82.0% feature · violin
gland_1_Xbp 13 XP_029210085.2 (Amil_Amillepora28580) 9.09 11.0 82.0% feature · violin
gland_1_Xbp 14 XP_044170211.1 (Amil_Amillepora35912) 11.91 10.8 80.3% feature · violin
gland_1_Xbp 15 Amil_orphan_12458 not mapped 11.42 10.6 78.7% feature · violin
gland_1_Xbp 16 XP_029191836.2 (Amil_Amillepora23257) 4.79 10.3 83.6% feature · violin
gland_1_Xbp 17 XP_044170215.1 (Amil_Amillepora35920) 11.65 10.2 75.4% feature · violin
gland_1_Xbp 18 XP_029188886.2 (Amil_Amillepora26132) 9.99 10.1 75.4% feature · violin
gland_1_Xbp 19 Amil_orphan_12457 not mapped 10.59 9.9 73.8% feature · violin
gland_1_Xbp 20 Amil_orphan_5503 not mapped 8.56 9.7 72.1% feature · violin
gland_1_Xbp 21 XP_044170778.1 (Amil_Amillepora37573) 11.95 9.5 70.5% feature · violin
gland_1_Xbp 22 XP_029211493.2 (Amil_Amillepora21603) 11.62 9.3 68.9% feature · violin
gland_1_Xbp 23 XP_029213377.1 (Amil_Amillepora06105) 3.54 9.1 82.0% feature · violin
gland_1_Xbp 24 XP_029202488.2 (Amil_Amillepora35010) 9.86 9.0 67.2% feature · violin
gland_1_Xbp 25 XP_044178099.1 (Amil_Amillepora18771) 6.08 9.0 68.9% feature · violin
gland_1_Xbp 26 Amil_orphan_12757 not mapped 9.24 8.8 65.6% feature · violin
gland_1_Xbp 27 XP_029213539.2 (Amil_Amillepora29526) 9.69 8.6 63.9% feature · violin
gland_1_Xbp 28 XP_029186787.2 (Amil_Amillepora24645) 3.56 8.6 75.4% feature · violin
gland_1_Xbp 29 XP_029189738.2 (Amil_Amillepora14298) 2.76 8.3 86.9% feature · violin
gland_1_Xbp 30 XP_044174281.1 (Amil_Amillepora22850) 9.57 7.9 59.0% feature · violin
gland_1_Xbp 31 Amil_orphan_1598 not mapped 3.60 7.8 68.9% feature · violin
gland_1_Xbp 32 Amil_orphan_812 not mapped 12.35 7.8 57.4% feature · violin
gland_1_Xbp 33 XP_044174234.1 (Amil_Amillepora22420) 11.88 7.7 57.4% feature · violin
gland_1_Xbp 34 XP_044173278.1 (Amil_Amillepora05835) 12.03 7.7 57.4% feature · violin
gland_1_Xbp 35 XP_029181163.2 (Amil_Amillepora32550) 4.71 7.6 60.7% feature · violin
gland_1_Xbp 36 XP_029193415.2 (Amil_Amillepora16353) 6.61 7.4 55.7% feature · violin
gland_1_Xbp 37 XP_044173991.1 (Amil_Amillepora22849) 10.64 7.3 54.1% feature · violin
gland_1_Xbp 38 Amil_Amillepora01321 not mapped 9.84 7.2 54.1% feature · violin
gland_1_Xbp 39 Amil_orphan_8577 not mapped 6.56 7.2 55.7% feature · violin
gland_1_Xbp 40 XP_044164920.1 (Amil_Amillepora27822) 2.91 7.2 70.5% feature · violin
gland_1_Xbp 41 XP_029189903.2 (Amil_Amillepora13207) 3.39 7.1 63.9% feature · violin
gland_1_Xbp 42 Amil_Amillepora22414 not mapped 11.43 7.1 52.5% feature · violin
gland_1_Xbp 43 XP_029196525.1 (Amil_Amillepora02592) 4.20 7.0 57.4% feature · violin
gland_1_Xbp 44 XP_029193101.2 (Amil_Amillepora14832) 11.75 6.9 50.8% feature · violin
gland_1_Xbp 45 XP_044176308.1 (Amil_Amillepora06681) 10.19 6.8 50.8% feature · violin
gland_1_Xbp 46 Amil_Amillepora26131 not mapped 7.94 6.8 50.8% feature · violin
gland_1_Xbp 47 XP_029195522.2 (Amil_Amillepora05705) 3.23 6.8 62.3% feature · violin
gland_1_Xbp 48 XP_044175665.1 (Amil_Amillepora08677) 4.41 6.7 54.1% feature · violin
gland_1_Xbp 49 XP_044179972.1 (Amil_Amillepora24462) 1.13 6.6 100.0% feature · violin
gland_1_Xbp 50 XP_029189016.2 (Amil_Amillepora29150) 5.27 6.3 49.2% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 14 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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