Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora22153 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
epidermis 1 Amil_orphan_10006 not mapped 5.33 85.9 92.3% feature · violin
epidermis 2 XP_029211194.1 (Amil_Amillepora19233) 4.88 85.4 93.3% feature · violin
epidermis 3 XP_029179382.2 (Amil_Amillepora01369) 5.08 84.0 89.5% feature · violin
epidermis 4 XP_044173691.1 (Amil_Amillepora22183) 5.16 82.9 95.9% feature · violin
epidermis 5 XP_044162991.1 (Amil_Amillepora15760) 6.87 82.5 88.5% feature · violin
epidermis 6 XP_044172822.1 (Amil_Amillepora04870) 6.01 77.1 84.3% feature · violin
epidermis 7 Amil_orphan_4743 not mapped 5.46 76.1 81.0% feature · violin
epidermis 8 XP_029191022.2 (Amil_Amillepora14669) 4.29 75.9 94.5% feature · violin
epidermis 9 XP_029191660.2 (Amil_Amillepora22153) 2.58 75.3 97.0% feature · violin
epidermis 10 Amil_orphan_4101 not mapped 5.48 73.3 75.5% feature · violin
epidermis 11 XP_044172821.1 (Amil_Amillepora04869) 5.61 73.0 76.7% feature · violin
epidermis 12 Amil_Amillepora34856 not mapped 5.60 70.4 74.9% feature · violin
epidermis 13 XP_044180236.1 (Amil_Amillepora24567) 5.89 69.9 71.6% feature · violin
epidermis 14 XP_029188643.1 (Amil_Amillepora05838) 5.27 69.6 72.9% feature · violin
epidermis 15 Amil_orphan_13412 not mapped 2.80 66.2 91.4% feature · violin
epidermis 16 XP_029190985.1 (Amil_Amillepora14676) 2.79 65.9 91.9% feature · violin
epidermis 17 Amil_orphan_4737 not mapped 4.36 65.4 72.8% feature · violin
epidermis 18 XP_029190656.1 (Amil_Amillepora04922) 3.38 65.1 92.1% feature · violin
epidermis 19 XP_029209118.2 (Amil_Amillepora31040) 2.90 64.2 96.9% feature · violin
epidermis 20 Amil_Amillepora06637 not mapped 4.58 63.3 86.4% feature · violin
epidermis 21 Amil_Amillepora21015 not mapped 5.33 61.7 64.4% feature · violin
epidermis 22 XP_029199624.1 (Amil_Amillepora04504) 3.56 59.9 73.4% feature · violin
epidermis 23 Amil_orphan_1482 not mapped 2.48 57.4 85.4% feature · violin
epidermis 24 XP_044176775.1 (Amil_Amillepora08356) 5.11 56.7 65.0% feature · violin
epidermis 25 XP_029189312.2 (Amil_Amillepora24565) 2.41 56.2 94.8% feature · violin
epidermis 26 Amil_orphan_12782 not mapped 4.81 54.8 61.2% feature · violin
epidermis 27 XP_029205252.2 (Amil_Amillepora32265) 2.77 54.6 74.7% feature · violin
epidermis 28 XP_029197905.1 (Amil_Amillepora00991) 5.11 54.6 56.7% feature · violin
epidermis 29 XP_044176775.1 (Amil_Amillepora08357) 4.86 54.2 59.7% feature · violin
epidermis 30 Amil_Amillepora22182 not mapped 4.76 53.3 56.9% feature · violin
epidermis 31 XP_029184223.2 (Amil_Amillepora11218) 2.25 52.8 85.1% feature · violin
epidermis 32 XP_029195599.2 (Amil_Amillepora01150) 2.09 52.8 84.8% feature · violin
epidermis 33 XP_029183928.2 (Amil_Amillepora11209) 5.50 52.6 56.4% feature · violin
epidermis 34 XP_029190041.2 (Amil_Amillepora13082) 3.69 52.4 62.1% feature · violin
epidermis 35 XP_044173853.1 (Amil_Amillepora22512) 2.99 50.7 69.9% feature · violin
epidermis 36 Amil_Amillepora20332 not mapped 4.59 49.5 52.3% feature · violin
epidermis 37 XP_029193873.2 (Amil_Amillepora04871) 4.32 48.4 53.0% feature · violin
epidermis 38 XP_029197904.2 (Amil_Amillepora00990) 5.63 48.1 48.9% feature · violin
epidermis 39 XP_029199121.1 (Amil_Amillepora04681) 2.71 48.0 63.4% feature · violin
epidermis 40 XP_044163313.1 (Amil_Amillepora15099) 3.33 47.9 57.0% feature · violin
epidermis 41 XP_029194600.1 (Amil_Amillepora23355) 2.85 47.5 60.8% feature · violin
epidermis 42 XP_029200869.1 (Amil_Amillepora17975) 1.43 47.4 92.2% feature · violin
epidermis 43 XP_029189461.2 (Amil_Amillepora26189) 3.47 46.7 53.7% feature · violin
epidermis 44 Amil_Amillepora19382 not mapped 2.41 46.3 71.1% feature · violin
epidermis 45 XP_029211561.1 (Amil_Amillepora02023) 3.38 46.0 53.4% feature · violin
epidermis 46 XP_029200966.1 (Amil_Amillepora28569) 2.62 45.8 66.1% feature · violin
epidermis 47 XP_029198517.2 (Amil_Amillepora00755) 1.67 45.7 87.1% feature · violin
epidermis 48 XP_029184722.2 (Amil_Amillepora00083) 5.06 45.2 46.9% feature · violin
epidermis 49 XP_044174722.1 (Amil_Amillepora09936) 3.85 44.8 49.9% feature · violin
epidermis 50 Amil_orphan_1412 not mapped 4.45 44.4 46.8% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 14 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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