Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora24599 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
gland_6 1 XP_044182280.1 (Amil_Amillepora18267) 7.58 9.0 75.0% feature · violin
gland_6 2 XP_044180098.1 (Amil_Amillepora24599) 11.82 8.1 65.4% feature · violin
gland_6 3 XP_029185107.2 (Amil_Amillepora10252) 5.88 8.0 67.3% feature · violin
gland_6 4 XP_044182281.1 (Amil_Amillepora18269) 6.49 7.5 63.5% feature · violin
gland_6 5 Amil_orphan_1483 not mapped 6.29 7.4 61.5% feature · violin
gland_6 6 Amil_Amillepora08077 not mapped 7.13 7.3 59.6% feature · violin
gland_6 7 Amil_orphan_7119 not mapped 11.39 7.2 57.7% feature · violin
gland_6 8 XP_044168738.1 (Amil_Amillepora29750) 7.59 7.1 57.7% feature · violin
gland_6 9 XP_044181992.1 (Amil_Amillepora20489) 11.26 6.9 55.8% feature · violin
gland_6 10 Amil_Amillepora10105 not mapped 12.30 6.7 53.8% feature · violin
gland_6 11 Amil_Amillepora12452 not mapped 9.00 6.4 51.9% feature · violin
gland_6 12 XP_029208095.2 (Amil_Amillepora12453) 7.44 6.4 51.9% feature · violin
gland_6 13 XP_029182764.2 (Amil_Amillepora20941) 7.01 6.3 51.9% feature · violin
gland_6 14 Amil_orphan_7055 not mapped 4.50 5.9 51.9% feature · violin
gland_6 15 Amil_orphan_2533 not mapped 5.78 5.5 46.2% feature · violin
gland_6 16 XP_029187658.1 (Amil_Amillepora09682) 5.29 5.5 46.2% feature · violin
gland_6 17 Amil_Amillepora14296 not mapped 4.59 5.3 46.2% feature · violin
gland_6 18 XP_029191936.1 (Amil_Amillepora22643) 1.91 5.3 69.2% feature · violin
gland_6 19 XP_029211952.2 (Amil_Amillepora04831) 10.71 5.3 42.3% feature · violin
gland_6 20 Amil_Amillepora01754 not mapped 3.17 5.2 51.9% feature · violin
gland_6 21 XP_029206798.2 (Amil_Amillepora29738) 6.55 5.2 42.3% feature · violin
gland_6 22 Amil_orphan_871 not mapped 3.45 5.1 50.0% feature · violin
gland_6 23 XP_044178463.1 (Amil_Amillepora19690) 11.40 5.0 40.4% feature · violin
gland_6 24 XP_044181992.1 (Amil_Amillepora20490) 9.15 5.0 40.4% feature · violin
gland_6 25 Amil_orphan_8476 not mapped 8.93 4.8 38.5% feature · violin
gland_6 26 XP_029206397.2 (Amil_Amillepora03878) 3.54 4.6 44.2% feature · violin
gland_6 27 Amil_Amillepora00131 not mapped 8.99 4.3 34.6% feature · violin
gland_6 28 XP_029189039.1 (Amil_Amillepora24715) 6.14 4.0 32.7% feature · violin
gland_6 29 XP_029191549.2 (Amil_Amillepora19949) 4.39 4.0 34.6% feature · violin
gland_6 30 Amil_orphan_13929 not mapped 0.48 3.9 88.5% feature · violin
gland_6 31 Amil_orphan_5435 not mapped 7.49 3.8 30.8% feature · violin
gland_6 32 Amil_orphan_9651 not mapped 5.81 3.7 30.8% feature · violin
gland_6 33 Amil_orphan_3795 not mapped 5.68 3.7 30.8% feature · violin
gland_6 34 Amil_orphan_938 not mapped 5.82 3.7 30.8% feature · violin
gland_6 35 XP_044179990.1 (Amil_Amillepora24836) 3.92 3.7 32.7% feature · violin
gland_6 36 XP_029197020.2 (Amil_Amillepora16774) 1.95 3.6 46.2% feature · violin
gland_6 37 XP_029199593.2 (Amil_Amillepora04570) 3.34 3.6 34.6% feature · violin
gland_6 38 XP_044164402.1 (Amil_Amillepora25131) 1.70 3.6 51.9% feature · violin
gland_6 39 Amil_orphan_3032 not mapped 5.84 3.5 28.8% feature · violin
gland_6 40 Amil_orphan_10006 not mapped 1.83 3.5 51.9% feature · violin
gland_6 41 Amil_orphan_9686 not mapped 5.22 3.4 28.8% feature · violin
gland_6 42 XP_029203633.2 (Amil_Amillepora34391) 11.04 3.4 26.9% feature · violin
gland_6 43 XP_044176181.1 (Amil_Amillepora06381) 10.27 3.4 26.9% feature · violin
gland_6 44 XP_029182851.2 (Amil_Amillepora06388) 10.03 3.3 26.9% feature · violin
gland_6 45 XP_029191356.2 (Amil_Amillepora06710) 3.55 3.3 30.8% feature · violin
gland_6 46 XP_044172033.1 (Amil_Amillepora37995) 8.62 3.3 26.9% feature · violin
gland_6 47 XP_029182848.2 (Amil_Amillepora06382) 9.53 3.3 26.9% feature · violin
gland_6 48 XP_029205701.1 (Amil_Amillepora16396) 3.17 3.2 30.8% feature · violin
gland_6 49 XP_029189411.1 (Amil_Amillepora24562) 4.69 3.1 26.9% feature · violin
gland_6 50 XP_029209799.1 (Amil_Amillepora33350) 3.52 3.1 28.8% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 20 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

TOP