Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora31485 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
epidermis_like_2 1 XP_044162991.1 (Amil_Amillepora15760) 7.46 34.1 99.8% feature · violin
epidermis_like_2 2 XP_044176269.1 (Amil_Amillepora06629) 8.16 33.9 97.2% feature · violin
epidermis_like_2 3 Amil_Amillepora34856 not mapped 6.32 33.1 98.6% feature · violin
epidermis_like_2 4 XP_044176775.1 (Amil_Amillepora08356) 7.78 33.0 96.5% feature · violin
epidermis_like_2 5 Amil_Amillepora32858 not mapped 7.60 32.9 95.1% feature · violin
epidermis_like_2 6 Amil_orphan_12782 not mapped 6.95 32.7 96.1% feature · violin
epidermis_like_2 7 Amil_orphan_4567 not mapped 8.56 32.3 91.7% feature · violin
epidermis_like_2 8 XP_044176775.1 (Amil_Amillepora08357) 6.78 32.2 95.1% feature · violin
epidermis_like_2 9 Amil_orphan_12578 not mapped 8.15 31.2 88.7% feature · violin
epidermis_like_2 10 XP_044172822.1 (Amil_Amillepora04870) 6.06 30.2 99.5% feature · violin
epidermis_like_2 11 Amil_orphan_6839 not mapped 8.37 30.1 85.2% feature · violin
epidermis_like_2 12 Amil_orphan_13412 not mapped 3.43 29.9 99.8% feature · violin
epidermis_like_2 13 Amil_orphan_4568 not mapped 7.54 29.7 84.7% feature · violin
epidermis_like_2 14 Amil_orphan_1678 not mapped 8.10 29.7 84.3% feature · violin
epidermis_like_2 15 XP_029190041.2 (Amil_Amillepora13082) 5.44 29.3 92.4% feature · violin
epidermis_like_2 16 Amil_Amillepora19382 not mapped 4.03 29.2 97.2% feature · violin
epidermis_like_2 17 Amil_orphan_9994 not mapped 7.07 29.2 84.0% feature · violin
epidermis_like_2 18 Amil_orphan_4737 not mapped 4.48 28.8 94.4% feature · violin
epidermis_like_2 19 XP_029199624.1 (Amil_Amillepora04504) 4.04 27.3 94.7% feature · violin
epidermis_like_2 20 Amil_Amillepora20332 not mapped 4.56 27.1 85.0% feature · violin
epidermis_like_2 21 XP_029202688.2 (Amil_Amillepora24488) 4.95 26.6 81.0% feature · violin
epidermis_like_2 22 XP_044172821.1 (Amil_Amillepora04869) 4.04 26.0 90.0% feature · violin
epidermis_like_2 23 XP_044166919.1 (Amil_Amillepora31485) 7.85 25.8 73.1% feature · violin
epidermis_like_2 24 Amil_orphan_10006 not mapped 3.94 25.7 95.1% feature · violin
epidermis_like_2 25 Amil_orphan_11272 not mapped 7.96 25.5 73.8% feature · violin
epidermis_like_2 26 XP_029188643.1 (Amil_Amillepora05838) 4.10 25.3 85.0% feature · violin
epidermis_like_2 27 XP_029211194.1 (Amil_Amillepora19233) 3.59 25.2 96.3% feature · violin
epidermis_like_2 28 XP_029179382.2 (Amil_Amillepora01369) 3.57 25.2 94.4% feature · violin
epidermis_like_2 29 XP_044180236.1 (Amil_Amillepora24567) 3.96 24.8 84.3% feature · violin
epidermis_like_2 30 XP_044171744.1 (Amil_Amillepora36863) 7.82 24.3 69.7% feature · violin
epidermis_like_2 31 XP_044162990.1 (Amil_Amillepora34863) 4.45 24.0 74.3% feature · violin
epidermis_like_2 32 XP_044169458.1 (Amil_Amillepora33434) 5.35 23.9 70.4% feature · violin
epidermis_like_2 33 Amil_orphan_12736 not mapped 4.48 23.6 72.7% feature · violin
epidermis_like_2 34 XP_029200966.1 (Amil_Amillepora28569) 3.44 23.2 91.7% feature · violin
epidermis_like_2 35 Amil_orphan_14979 not mapped 7.94 23.0 65.0% feature · violin
epidermis_like_2 36 Amil_orphan_1482 not mapped 2.66 22.8 95.6% feature · violin
epidermis_like_2 37 Amil_orphan_13239 not mapped 5.28 22.7 67.8% feature · violin
epidermis_like_2 38 Amil_orphan_3663 not mapped 4.33 22.4 69.4% feature · violin
epidermis_like_2 39 Amil_orphan_12717 not mapped 4.48 22.3 68.3% feature · violin
epidermis_like_2 40 XP_029184223.2 (Amil_Amillepora11218) 2.47 22.0 94.7% feature · violin
epidermis_like_2 41 XP_044163313.1 (Amil_Amillepora15099) 3.28 21.2 76.4% feature · violin
epidermis_like_2 42 XP_029199121.1 (Amil_Amillepora04681) 2.85 21.2 82.2% feature · violin
epidermis_like_2 43 XP_029190520.2 (Amil_Amillepora08556) 1.85 20.5 97.9% feature · violin
epidermis_like_2 44 XP_029191660.2 (Amil_Amillepora22153) 1.95 20.4 98.8% feature · violin
epidermis_like_2 45 XP_029190985.1 (Amil_Amillepora14676) 2.39 20.3 96.8% feature · violin
epidermis_like_2 46 XP_029183928.2 (Amil_Amillepora11209) 4.24 19.9 70.4% feature · violin
epidermis_like_2 47 Amil_orphan_13252 not mapped 5.05 19.6 60.0% feature · violin
epidermis_like_2 48 XP_029186231.2 (Amil_Amillepora32594) 3.50 19.6 66.0% feature · violin
epidermis_like_2 49 XP_044168838.1 (Amil_Amillepora15326) 3.16 19.6 69.9% feature · violin
epidermis_like_2 50 XP_029191022.2 (Amil_Amillepora14669) 2.82 19.5 95.6% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 22 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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