Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora32282 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
neuron_Isl_2 1 XP_029200533.2 (Amil_Amillepora08605) 5.80 25.6 73.3% feature · violin
neuron_Isl_2 2 Amil_Amillepora01727 not mapped 8.58 25.2 68.9% feature · violin
neuron_Isl_2 3 XP_029206397.2 (Amil_Amillepora03878) 5.53 24.9 72.2% feature · violin
neuron_Isl_2 4 Amil_Amillepora03877 not mapped 6.78 24.0 66.3% feature · violin
neuron_Isl_2 5 XP_029208331.2 (Amil_Amillepora07597) 4.45 23.6 72.0% feature · violin
neuron_Isl_2 6 XP_029180381.2 (Amil_Amillepora32633) 4.39 23.0 71.2% feature · violin
neuron_Isl_2 7 XP_044163779.1 (Amil_Amillepora26196) 5.80 22.0 61.9% feature · violin
neuron_Isl_2 8 Amil_orphan_7055 not mapped 5.27 22.0 62.9% feature · violin
neuron_Isl_2 9 XP_029200397.1 (Amil_Amillepora04670) 4.58 20.9 62.5% feature · violin
neuron_Isl_2 10 XP_029204784.2 (Amil_Amillepora24434) 5.48 20.2 57.0% feature · violin
neuron_Isl_2 11 XP_029206497.2 (Amil_Amillepora27359) 3.02 17.9 62.7% feature · violin
neuron_Isl_2 12 XP_029185740.2 (Amil_Amillepora17016) 6.18 17.9 49.4% feature · violin
neuron_Isl_2 13 Amil_Amillepora08959 not mapped 6.16 17.8 49.2% feature · violin
neuron_Isl_2 14 XP_029191356.2 (Amil_Amillepora06710) 4.65 16.4 47.7% feature · violin
neuron_Isl_2 15 Amil_orphan_860 not mapped 6.87 16.4 45.3% feature · violin
neuron_Isl_2 16 Amil_Amillepora27402 not mapped 4.47 16.4 48.1% feature · violin
neuron_Isl_2 17 Amil_Amillepora08190 not mapped 8.75 16.0 43.2% feature · violin
neuron_Isl_2 18 XP_029185107.2 (Amil_Amillepora10252) 4.51 15.9 46.2% feature · violin
neuron_Isl_2 19 Amil_Amillepora32911 not mapped 7.55 14.8 40.3% feature · violin
neuron_Isl_2 20 Amil_orphan_7440 not mapped 8.58 14.8 40.0% feature · violin
neuron_Isl_2 21 XP_044183565.1 (Amil_Amillepora26283) 4.93 14.5 41.3% feature · violin
neuron_Isl_2 22 XP_044176931.1 (Amil_Amillepora07302) 5.03 14.5 41.1% feature · violin
neuron_Isl_2 23 XP_029182906.2 (Amil_Amillepora01780) 4.33 14.3 41.9% feature · violin
neuron_Isl_2 24 Amil_Amillepora08193 not mapped 7.75 14.3 39.0% feature · violin
neuron_Isl_2 25 XP_044164314.1 (Amil_Amillepora24860) 4.50 13.8 40.0% feature · violin
neuron_Isl_2 26 Amil_Amillepora01728 not mapped 7.48 13.7 37.3% feature · violin
neuron_Isl_2 27 XP_029192260.2 (Amil_Amillepora14471) 5.11 13.7 38.6% feature · violin
neuron_Isl_2 28 Amil_Amillepora32282 not mapped 8.42 13.5 36.4% feature · violin
neuron_Isl_2 29 XP_044176980.1 (Amil_Amillepora08202) 7.63 13.4 36.7% feature · violin
neuron_Isl_2 30 XP_044172315.1 (Amil_Amillepora04837) 4.89 13.3 37.9% feature · violin
neuron_Isl_2 31 Amil_orphan_8270 not mapped 2.16 13.2 54.7% feature · violin
neuron_Isl_2 32 XP_044178703.1 (Amil_Amillepora12442) 2.39 13.1 51.1% feature · violin
neuron_Isl_2 33 XP_044164269.1 (Amil_Amillepora26166) 2.10 12.8 54.2% feature · violin
neuron_Isl_2 34 XP_029204277.1 (Amil_Amillepora08884) 6.17 12.8 35.8% feature · violin
neuron_Isl_2 35 XP_029192673.2 (Amil_Amillepora01095) 5.49 12.7 35.2% feature · violin
neuron_Isl_2 36 Amil_orphan_7344 not mapped 7.08 12.5 33.9% feature · violin
neuron_Isl_2 37 Amil_Amillepora08230 not mapped 5.54 12.4 38.6% feature · violin
neuron_Isl_2 38 XP_029206656.2 (Amil_Amillepora07009) 2.46 12.2 46.0% feature · violin
neuron_Isl_2 39 XP_044180826.1 (Amil_Amillepora20651) 4.83 12.1 34.3% feature · violin
neuron_Isl_2 40 XP_044173931.1 (Amil_Amillepora22670) 2.73 12.0 41.7% feature · violin
neuron_Isl_2 41 XP_029194071.1 (Amil_Amillepora19006) 4.35 11.9 34.5% feature · violin
neuron_Isl_2 42 Amil_Amillepora13374 not mapped 4.68 11.9 34.1% feature · violin
neuron_Isl_2 43 XP_029213011.1 (Amil_Amillepora14040) 4.26 11.9 34.5% feature · violin
neuron_Isl_2 44 Amil_Amillepora08883 not mapped 8.41 11.9 32.0% feature · violin
neuron_Isl_2 45 Amil_orphan_7442 not mapped 9.07 11.7 31.6% feature · violin
neuron_Isl_2 46 XP_029194051.2 (Amil_Amillepora19005) 4.52 11.6 33.5% feature · violin
neuron_Isl_2 47 Amil_Amillepora05960 not mapped 5.16 11.6 32.6% feature · violin
neuron_Isl_2 48 XP_044183983.1 (Amil_Amillepora14512) 4.82 11.6 33.1% feature · violin
neuron_Isl_2 49 XP_029180555.2 (Amil_Amillepora09533) 4.76 11.5 32.6% feature · violin
neuron_Isl_2 50 XP_029184800.1 (Amil_Amillepora00038) 4.02 11.3 33.5% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 19 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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