Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis_15572 epidermis4171 gastrodermis_23249 gastrodermis_alga_hosting2466 gastrodermis_like1530 calicoblast1417 neuron_Isl_1931 gastrodermis_muscle827 neuron_Pou4669 immune_1531 gastrodermis_mitotic487 neuron_Isl_2472 neurosecretory_progenitors435 epidermis_like_2432 epidermis_like_1411 germline_oocytes366 gland_2310 neuron_Pou4_Otp250 immune_2143 cnidocyte85 gland_482 gland_363 gland_1_Xbp61 immune_357 gland_553 gland_652 digestive_filaments42

Showing the cell type that Amil_Amillepora32297 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
immune_3 1 XP_044176694.1 (Amil_Amillepora07698) 13.49 13.1 100.0% feature · violin
immune_3 2 XP_044177211.1 (Amil_Amillepora07752) 14.60 13.1 100.0% feature · violin
immune_3 3 XP_044178762.1 (Amil_Amillepora12517) 14.96 13.1 100.0% feature · violin
immune_3 4 Amil_orphan_7061 not mapped 10.40 12.9 100.0% feature · violin
immune_3 5 XP_029191147.1 (Amil_Amillepora08786) 12.13 12.8 98.2% feature · violin
immune_3 6 XP_029205097.2 (Amil_Amillepora32297) 9.03 12.8 98.2% feature · violin
immune_3 7 XP_044163948.1 (Amil_Amillepora26130) 13.58 12.6 96.5% feature · violin
immune_3 8 XP_029210073.2 (Amil_Amillepora07750) 13.84 12.6 96.5% feature · violin
immune_3 9 XP_044173784.1 (Amil_Amillepora22384) 3.51 12.5 100.0% feature · violin
immune_3 10 XP_044168557.1 (Amil_Amillepora28966) 10.29 12.4 94.7% feature · violin
immune_3 11 XP_029192128.2 (Amil_Amillepora13159) 4.03 12.3 100.0% feature · violin
immune_3 12 XP_029180381.2 (Amil_Amillepora32633) 6.18 12.3 100.0% feature · violin
immune_3 13 XP_029191176.2 (Amil_Amillepora16671) 4.43 12.2 98.2% feature · violin
immune_3 14 XP_029197443.2 (Amil_Amillepora15207) 4.67 12.0 100.0% feature · violin
immune_3 15 XP_044164481.1 (Amil_Amillepora25575) 7.52 12.0 93.0% feature · violin
immune_3 16 XP_044181848.1 (Amil_Amillepora20876) 7.03 12.0 93.0% feature · violin
immune_3 17 XP_029186222.2 (Amil_Amillepora24391) 2.88 11.9 100.0% feature · violin
immune_3 18 XP_029179359.1 (Amil_Amillepora01370) 4.39 11.9 98.2% feature · violin
immune_3 19 XP_029200530.1 (Amil_Amillepora08612) 10.27 11.9 91.2% feature · violin
immune_3 20 Amil_Amillepora07717 not mapped 3.35 11.8 100.0% feature · violin
immune_3 21 XP_044173101.1 (Amil_Amillepora05377) 6.74 11.8 93.0% feature · violin
immune_3 22 XP_029197377.2 (Amil_Amillepora04319) 5.23 11.7 94.7% feature · violin
immune_3 23 XP_029209118.2 (Amil_Amillepora31040) 4.10 11.5 100.0% feature · violin
immune_3 24 Amil_orphan_7853 not mapped 12.27 11.5 87.7% feature · violin
immune_3 25 XP_029179382.2 (Amil_Amillepora01369) 5.23 11.4 93.0% feature · violin
immune_3 26 XP_029182750.1 (Amil_Amillepora08479) 2.78 11.3 100.0% feature · violin
immune_3 27 XP_029190622.2 (Amil_Amillepora04977) 3.43 11.3 100.0% feature · violin
immune_3 28 XP_029188227.1 (Amil_Amillepora09030) 4.71 11.3 94.7% feature · violin
immune_3 29 XP_044181474.1 (Amil_Amillepora21273) 7.76 11.1 86.0% feature · violin
immune_3 30 Amil_Amillepora18069 not mapped 5.98 10.9 87.7% feature · violin
immune_3 31 XP_029184819.1 (Amil_Amillepora00086) 5.92 10.8 87.7% feature · violin
immune_3 32 XP_044174117.1 (Amil_Amillepora23283) 5.68 10.8 87.7% feature · violin
immune_3 33 XP_044181616.1 (Amil_Amillepora21032) 10.05 10.7 82.5% feature · violin
immune_3 34 XP_029183233.2 (Amil_Amillepora32200) 2.76 10.6 100.0% feature · violin
immune_3 35 XP_029195377.2 (Amil_Amillepora22006) 5.17 10.5 89.5% feature · violin
immune_3 36 XP_029195599.2 (Amil_Amillepora01150) 2.91 10.5 98.2% feature · violin
immune_3 37 Amil_orphan_4810 not mapped 8.63 10.5 80.7% feature · violin
immune_3 38 Amil_orphan_554 not mapped 5.23 10.2 84.2% feature · violin
immune_3 39 XP_029191022.2 (Amil_Amillepora14669) 4.18 10.1 100.0% feature · violin
immune_3 40 XP_029186421.2 (Amil_Amillepora27310) 5.87 10.1 80.7% feature · violin
immune_3 41 XP_029180433.2 (Amil_Amillepora36567) 5.61 9.9 78.9% feature · violin
immune_3 42 Amil_orphan_5814 not mapped 3.98 9.9 86.0% feature · violin
immune_3 43 XP_029189873.2 (Amil_Amillepora16483) 4.58 9.8 84.2% feature · violin
immune_3 44 XP_029189534.2 (Amil_Amillepora25994) 10.73 9.8 75.4% feature · violin
immune_3 45 XP_029204150.2 (Amil_Amillepora18317) 10.21 9.8 75.4% feature · violin
immune_3 46 XP_029205120.2 (Amil_Amillepora32295) 9.88 9.6 73.7% feature · violin
immune_3 47 XP_029205470.2 (Amil_Amillepora32171) 8.94 9.6 73.7% feature · violin
immune_3 48 XP_029194007.2 (Amil_Amillepora19055) 4.97 9.5 78.9% feature · violin
immune_3 49 XP_044163313.1 (Amil_Amillepora15099) 4.20 9.5 82.5% feature · violin
immune_3 50 XP_029185507.2 (Amil_Amillepora03123) 5.53 9.4 75.4% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Acropora millepora, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 7 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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